s21n34
USER_NAME=my
TYPE=RNAseq
SLAM=N
BASE_FOLDER=/faststorage/project/PAN_illumina/results/
FOLDER=/faststorage/project/PAN_illumina/results//my/dm6/RNAseq/2025-01-27-RNAseq_Thomas_PolyA_fullexp/
FOLDER_NAME=RNAseq_Thomas_PolyA_fullexp
RUNname=2025-01-27-RNAseq_Thomas_PolyA_fullexp
TMPdir=/faststorage/project/PAN_illumina/tmp//my/dm6/RNAseq/2025-01-27-RNAseq_Thomas_PolyA_fullexp/
LIB_STORAGE_FOLDER=/faststorage/project/PAN_illumina/data/libSTORAGE/
SINGULARITYdir=/home/my/AP_singu/
downDIR=/faststorage/project/PAN_illumina/tmp//NGS_downloads/
DEBUG=N
VERSION=r6.40
asmHUBpath=
ASMdir=
ASMname=
BAM=N
fwADAPTOR=
rvADAPTOR=
N_TRIMM=
rawPAIRED=N
onlyPAIRED=N
FASTQout=N
FASTQoutRAW=N
SUBSAMPLE=
MIN_LENGTH=18
MAX_LENGTH=1000
RAW=
TRIMM=Y
FIRST=6
LAST=200
INVERT=N
Ychrom=N
RANDOMmulti=N
MM=2
FILTERING_INPUT=rRNA:tRNA:mito
WIG=Y
WIG_FASTA=
spikeINnorm=N
noNORM=
EXTEND=0
COMPUTING=C
GRIDsystem=SLURM
keepTMP=N
SCRIPT_DIR=/faststorage/project/PAN_illumina/tmp//my/dm6/RNAseq/2025-01-27-RNAseq_Thomas_PolyA_fullexp/script-files/
BASE_UTILITY_LOCATION=/faststorage/project/PAN_illumina/utilities/AnnotationPipeline/
UTILITY_LOCATION=/faststorage/project/PAN_illumina/utilities/AnnotationPipeline/dmel/dm6/
RELEASE=
VERSION=r6.40
UTILITY_DIR=/faststorage/project/PAN_illumina/backup/scripts/AnnotationPipeline/utility-files/
nFILES=23
FILE_CONTAINING_LIBRARIES=/faststorage/project/PAN_illumina/tmp//my/dm6/RNAseq/2025-01-27-RNAseq_Thomas_PolyA_fullexp/files.txt
FOLDER_NAME=RNAseq_Thomas_PolyA_fullexp
GENOME_VERSION=dm6
subCOLOR=0~128~0
FORCE=
SYSTEM=EXTERN
LOGs=/faststorage/project/PAN_illumina/results//my/dm6/RNAseq/2025-01-27-RNAseq_Thomas_PolyA_fullexp/LOGs/
prepareREF=no
nSPLITS=1000000
SE=N
SE2nd=
maxCOUNT=1000000
demuxFASTA=N
autoViewLimits=
only5end=
PingPong=
DGE=N
GEO=
noSTRANDED=
FORCEimport=
exportBAM=N
exportBAMuncollapsed=N
RATIOtracks=N
GENOMEdir=/faststorage/project/PAN_illumina/results//my/dm6/
newCOLLECTION=N
refGENO=none
GENO=none
Nexec=1
2
[1] "argmat"  "args"    "DGE"     "FOLDER"  "GENO"    "i"       "Nexec"  
[8] "refGENO" "TMP"    
 [1] 1.0470200 1.0591090 1.0319608 1.0592885 1.0191323 0.9347246 1.0701182
 [8] 0.9258994 1.0143056 0.9976228 0.9995308 0.9657581 0.9601695 0.9329033
[15] 1.0128746 0.9845229 1.0072446 0.9615696 0.9176780 1.0364671 1.0103394
[22] 1.0412847 1.0336013
0.733333