++ sed 's/,/\t/g;s/"//g'
++ echo USER_NAME=thomasgrnbk,TYPE=sRNAseq,SLAM=N,BASE_FOLDER=/faststorage/project/PAN_illumina/results/,FOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/,FOLDER_NAME=sRNAseq_HsBam_10Muniqnorm,RUNname=2024-03-21-sRNAseq_HsBam_10Muniqnorm,TMPdir=/faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/,LIB_STORAGE_FOLDER=/faststorage/project/PAN_illumina/data/libSTORAGE/,SINGULARITYdir=/home/thomasgrnbk/AP_singu/,downDIR=/faststorage/project/PAN_illumina/tmp//NGS_downloads/,DEBUG=N,VERSION=r6.40,asmHUBpath=,ASMdir=,ASMname=,BAM=N,fwADAPTOR=,rvADAPTOR=,N_TRIMM=,rawPAIRED=N,onlyPAIRED=N,FASTQout=N,FASTQoutRAW=N,SUBSAMPLE=,MIN_LENGTH=18,MAX_LENGTH=1000,RAW=,TRIMM=,FIRST=1,LAST=1000,INVERT=N,Ychrom=N,RANDOMmulti=N,MM=0,FILTERING_INPUT=rRNA:tRNA:mito:miRNA:pre_miRNA:snRNA:snoRNA:ncRNA,WIG=Y,WIG_FASTA=,spikeINnorm=N,noNORM=,EXTEND=0,COMPUTING=C,GRIDsystem=SLURM,keepTMP=N,SCRIPT_DIR=/faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/script-files/,BASE_UTILITY_LOCATION=/faststorage/project/PAN_illumina/utilities/AnnotationPipeline/,UTILITY_LOCATION=/faststorage/project/PAN_illumina/utilities/AnnotationPipeline/dmel/dm6/,RELEASE=,VERSION=r6.40,UTILITY_DIR=/faststorage/project/PAN_illumina/backup/scripts/AnnotationPipeline/utility-files/,nFILES=20,FILE_CONTAINING_LIBRARIES=/faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/files.txt,FOLDER_NAME=sRNAseq_HsBam_10Muniqnorm,GENOME_VERSION=dm6,subCOLOR=0~0~0,FORCE=,SYSTEM=EXTERN,LOGs=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/LOGs/,prepareREF=no,nSPLITS=1000000,SE=N,SE2nd=,maxCOUNT=1000000,demuxFASTA=N,autoViewLimits=,only5end=,PingPong=,DGE=,GEO=,noSTRANDED=,FORCEimport=,exportBAM=N,exportBAMuncollapsed=N,RATIOtracks=N,GENOMEdir=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/,newCOLLECTION=N
+ VARI='USER_NAME=thomasgrnbk	TYPE=sRNAseq	SLAM=N	BASE_FOLDER=/faststorage/project/PAN_illumina/results/	FOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/	FOLDER_NAME=sRNAseq_HsBam_10Muniqnorm	RUNname=2024-03-21-sRNAseq_HsBam_10Muniqnorm	TMPdir=/faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/	LIB_STORAGE_FOLDER=/faststorage/project/PAN_illumina/data/libSTORAGE/	SINGULARITYdir=/home/thomasgrnbk/AP_singu/	downDIR=/faststorage/project/PAN_illumina/tmp//NGS_downloads/	DEBUG=N	VERSION=r6.40	asmHUBpath=	ASMdir=	ASMname=	BAM=N	fwADAPTOR=	rvADAPTOR=	N_TRIMM=	rawPAIRED=N	onlyPAIRED=N	FASTQout=N	FASTQoutRAW=N	SUBSAMPLE=	MIN_LENGTH=18	MAX_LENGTH=1000	RAW=	TRIMM=	FIRST=1	LAST=1000	INVERT=N	Ychrom=N	RANDOMmulti=N	MM=0	FILTERING_INPUT=rRNA:tRNA:mito:miRNA:pre_miRNA:snRNA:snoRNA:ncRNA	WIG=Y	WIG_FASTA=	spikeINnorm=N	noNORM=	EXTEND=0	COMPUTING=C	GRIDsystem=SLURM	keepTMP=N	SCRIPT_DIR=/faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/script-files/	BASE_UTILITY_LOCATION=/faststorage/project/PAN_illumina/utilities/AnnotationPipeline/	UTILITY_LOCATION=/faststorage/project/PAN_illumina/utilities/AnnotationPipeline/dmel/dm6/	RELEASE=	VERSION=r6.40	UTILITY_DIR=/faststorage/project/PAN_illumina/backup/scripts/AnnotationPipeline/utility-files/	nFILES=20	FILE_CONTAINING_LIBRARIES=/faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/files.txt	FOLDER_NAME=sRNAseq_HsBam_10Muniqnorm	GENOME_VERSION=dm6	subCOLOR=0~0~0	FORCE=	SYSTEM=EXTERN	LOGs=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/LOGs/	prepareREF=no	nSPLITS=1000000	SE=N	SE2nd=	maxCOUNT=1000000	demuxFASTA=N	autoViewLimits=	only5end=	PingPong=	DGE=	GEO=	noSTRANDED=	FORCEimport=	exportBAM=N	exportBAMuncollapsed=N	RATIOtracks=N	GENOMEdir=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/	newCOLLECTION=N'
+ eval 'USER_NAME=thomasgrnbk	TYPE=sRNAseq	SLAM=N	BASE_FOLDER=/faststorage/project/PAN_illumina/results/	FOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/	FOLDER_NAME=sRNAseq_HsBam_10Muniqnorm	RUNname=2024-03-21-sRNAseq_HsBam_10Muniqnorm	TMPdir=/faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/	LIB_STORAGE_FOLDER=/faststorage/project/PAN_illumina/data/libSTORAGE/	SINGULARITYdir=/home/thomasgrnbk/AP_singu/	downDIR=/faststorage/project/PAN_illumina/tmp//NGS_downloads/	DEBUG=N	VERSION=r6.40	asmHUBpath=	ASMdir=	ASMname=	BAM=N	fwADAPTOR=	rvADAPTOR=	N_TRIMM=	rawPAIRED=N	onlyPAIRED=N	FASTQout=N	FASTQoutRAW=N	SUBSAMPLE=	MIN_LENGTH=18	MAX_LENGTH=1000	RAW=	TRIMM=	FIRST=1	LAST=1000	INVERT=N	Ychrom=N	RANDOMmulti=N	MM=0	FILTERING_INPUT=rRNA:tRNA:mito:miRNA:pre_miRNA:snRNA:snoRNA:ncRNA	WIG=Y	WIG_FASTA=	spikeINnorm=N	noNORM=	EXTEND=0	COMPUTING=C	GRIDsystem=SLURM	keepTMP=N	SCRIPT_DIR=/faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/script-files/	BASE_UTILITY_LOCATION=/faststorage/project/PAN_illumina/utilities/AnnotationPipeline/	UTILITY_LOCATION=/faststorage/project/PAN_illumina/utilities/AnnotationPipeline/dmel/dm6/	RELEASE=	VERSION=r6.40	UTILITY_DIR=/faststorage/project/PAN_illumina/backup/scripts/AnnotationPipeline/utility-files/	nFILES=20	FILE_CONTAINING_LIBRARIES=/faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/files.txt	FOLDER_NAME=sRNAseq_HsBam_10Muniqnorm	GENOME_VERSION=dm6	subCOLOR=0~0~0	FORCE=	SYSTEM=EXTERN	LOGs=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/LOGs/	prepareREF=no	nSPLITS=1000000	SE=N	SE2nd=	maxCOUNT=1000000	demuxFASTA=N	autoViewLimits=	only5end=	PingPong=	DGE=	GEO=	noSTRANDED=	FORCEimport=	exportBAM=N	exportBAMuncollapsed=N	RATIOtracks=N	GENOMEdir=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/	newCOLLECTION=N'
++ USER_NAME=thomasgrnbk
++ TYPE=sRNAseq
++ SLAM=N
++ BASE_FOLDER=/faststorage/project/PAN_illumina/results/
++ FOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/
++ FOLDER_NAME=sRNAseq_HsBam_10Muniqnorm
++ RUNname=2024-03-21-sRNAseq_HsBam_10Muniqnorm
++ TMPdir=/faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/
++ LIB_STORAGE_FOLDER=/faststorage/project/PAN_illumina/data/libSTORAGE/
++ SINGULARITYdir=/home/thomasgrnbk/AP_singu/
++ downDIR=/faststorage/project/PAN_illumina/tmp//NGS_downloads/
++ DEBUG=N
++ VERSION=r6.40
++ asmHUBpath=
++ ASMdir=
++ ASMname=
++ BAM=N
++ fwADAPTOR=
++ rvADAPTOR=
++ N_TRIMM=
++ rawPAIRED=N
++ onlyPAIRED=N
++ FASTQout=N
++ FASTQoutRAW=N
++ SUBSAMPLE=
++ MIN_LENGTH=18
++ MAX_LENGTH=1000
++ RAW=
++ TRIMM=
++ FIRST=1
++ LAST=1000
++ INVERT=N
++ Ychrom=N
++ RANDOMmulti=N
++ MM=0
++ FILTERING_INPUT=rRNA:tRNA:mito:miRNA:pre_miRNA:snRNA:snoRNA:ncRNA
++ WIG=Y
++ WIG_FASTA=
++ spikeINnorm=N
++ noNORM=
++ EXTEND=0
++ COMPUTING=C
++ GRIDsystem=SLURM
++ keepTMP=N
++ SCRIPT_DIR=/faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/script-files/
++ BASE_UTILITY_LOCATION=/faststorage/project/PAN_illumina/utilities/AnnotationPipeline/
++ UTILITY_LOCATION=/faststorage/project/PAN_illumina/utilities/AnnotationPipeline/dmel/dm6/
++ RELEASE=
++ VERSION=r6.40
++ UTILITY_DIR=/faststorage/project/PAN_illumina/backup/scripts/AnnotationPipeline/utility-files/
++ nFILES=20
++ FILE_CONTAINING_LIBRARIES=/faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/files.txt
++ FOLDER_NAME=sRNAseq_HsBam_10Muniqnorm
++ GENOME_VERSION=dm6
++ subCOLOR=0~0~0
++ FORCE=
++ SYSTEM=EXTERN
++ LOGs=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/LOGs/
++ prepareREF=no
++ nSPLITS=1000000
++ SE=N
++ SE2nd=
++ maxCOUNT=1000000
++ demuxFASTA=N
++ autoViewLimits=
++ only5end=
++ PingPong=
++ DGE=
++ GEO=
++ noSTRANDED=
++ FORCEimport=
++ exportBAM=N
++ exportBAMuncollapsed=N
++ RATIOtracks=N
++ GENOMEdir=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/
++ newCOLLECTION=N
+ sed 's/,/\n/g'
+ echo USER_NAME=thomasgrnbk,TYPE=sRNAseq,SLAM=N,BASE_FOLDER=/faststorage/project/PAN_illumina/results/,FOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/,FOLDER_NAME=sRNAseq_HsBam_10Muniqnorm,RUNname=2024-03-21-sRNAseq_HsBam_10Muniqnorm,TMPdir=/faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/,LIB_STORAGE_FOLDER=/faststorage/project/PAN_illumina/data/libSTORAGE/,SINGULARITYdir=/home/thomasgrnbk/AP_singu/,downDIR=/faststorage/project/PAN_illumina/tmp//NGS_downloads/,DEBUG=N,VERSION=r6.40,asmHUBpath=,ASMdir=,ASMname=,BAM=N,fwADAPTOR=,rvADAPTOR=,N_TRIMM=,rawPAIRED=N,onlyPAIRED=N,FASTQout=N,FASTQoutRAW=N,SUBSAMPLE=,MIN_LENGTH=18,MAX_LENGTH=1000,RAW=,TRIMM=,FIRST=1,LAST=1000,INVERT=N,Ychrom=N,RANDOMmulti=N,MM=0,FILTERING_INPUT=rRNA:tRNA:mito:miRNA:pre_miRNA:snRNA:snoRNA:ncRNA,WIG=Y,WIG_FASTA=,spikeINnorm=N,noNORM=,EXTEND=0,COMPUTING=C,GRIDsystem=SLURM,keepTMP=N,SCRIPT_DIR=/faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/script-files/,BASE_UTILITY_LOCATION=/faststorage/project/PAN_illumina/utilities/AnnotationPipeline/,UTILITY_LOCATION=/faststorage/project/PAN_illumina/utilities/AnnotationPipeline/dmel/dm6/,RELEASE=,VERSION=r6.40,UTILITY_DIR=/faststorage/project/PAN_illumina/backup/scripts/AnnotationPipeline/utility-files/,nFILES=20,FILE_CONTAINING_LIBRARIES=/faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/files.txt,FOLDER_NAME=sRNAseq_HsBam_10Muniqnorm,GENOME_VERSION=dm6,subCOLOR=0~0~0,FORCE=,SYSTEM=EXTERN,LOGs=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/LOGs/,prepareREF=no,nSPLITS=1000000,SE=N,SE2nd=,maxCOUNT=1000000,demuxFASTA=N,autoViewLimits=,only5end=,PingPong=,DGE=,GEO=,noSTRANDED=,FORCEimport=,exportBAM=N,exportBAMuncollapsed=N,RATIOtracks=N,GENOMEdir=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/,newCOLLECTION=N
++ date +%s
+ TIME=1711064160
+ TIMEx=1711064160
+ [[ SLURM == SLURM ]]
+ CORES=2
+ echo 2
+ source /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/script-files/tools
++ set -a
+ locTMP=/faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/
+ mkdir -p /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/
+ chmod 777 /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/
+ TMPDIR=/faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/
+ cd /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/
+ echo /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/
+ mkdir /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/plots
+ cut -f 2
+ tr ' ' '\t'
+ cat /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/files.txt
+ rm -rf /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/annotation_counts.txt
++ tr '\n' '\t'
++ awk '{ print $2 }'
++ cat /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/files.txt
+ NAMElist='sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG	sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA	sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT	sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA	sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT	sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG	sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA	sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT	sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG	sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG	sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA	sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA	sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC	sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA	sRNAseq_HsBam_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC	sRNAseq_HsBam_ControlKD_00hAHS_repB_283080_sRBC_GTCAG	sRNAseq_HsBam_ControlKD_00hAHS_repC_283081_sRBC_CAGTG	sRNAseq_HsBam_ControlKD_68hAHS_repD_283082_sRBC_TGACT	sRNAseq_HsBam_PiwiKD_68hAHS_repB_283080_sRBC_ATGGA	sRNAseq_HsBam_ControlKD_68hAHS_repB_283080_sRBC_TGACT	'
++ printf 'annotation\tsRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG	sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA	sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT	sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA	sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT	sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG	sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA	sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT	sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG	sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG	sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA	sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA	sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC	sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA	sRNAseq_HsBam_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC	sRNAseq_HsBam_ControlKD_00hAHS_repB_283080_sRBC_GTCAG	sRNAseq_HsBam_ControlKD_00hAHS_repC_283081_sRBC_CAGTG	sRNAseq_HsBam_ControlKD_68hAHS_repD_283082_sRBC_TGACT	sRNAseq_HsBam_PiwiKD_68hAHS_repB_283080_sRBC_ATGGA	sRNAseq_HsBam_ControlKD_68hAHS_repB_283080_sRBC_TGACT	'
+ NAMElistANN='annotation	sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG	sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA	sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT	sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA	sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT	sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG	sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA	sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT	sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG	sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG	sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA	sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA	sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC	sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA	sRNAseq_HsBam_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC	sRNAseq_HsBam_ControlKD_00hAHS_repB_283080_sRBC_GTCAG	sRNAseq_HsBam_ControlKD_00hAHS_repC_283081_sRBC_CAGTG	sRNAseq_HsBam_ControlKD_68hAHS_repD_283082_sRBC_TGACT	sRNAseq_HsBam_PiwiKD_68hAHS_repB_283080_sRBC_ATGGA	sRNAseq_HsBam_ControlKD_68hAHS_repB_283080_sRBC_TGACT	'
++ printf 'length\tsRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG	sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA	sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT	sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA	sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT	sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG	sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA	sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT	sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG	sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG	sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA	sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA	sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC	sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA	sRNAseq_HsBam_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC	sRNAseq_HsBam_ControlKD_00hAHS_repB_283080_sRBC_GTCAG	sRNAseq_HsBam_ControlKD_00hAHS_repC_283081_sRBC_CAGTG	sRNAseq_HsBam_ControlKD_68hAHS_repD_283082_sRBC_TGACT	sRNAseq_HsBam_PiwiKD_68hAHS_repB_283080_sRBC_ATGGA	sRNAseq_HsBam_ControlKD_68hAHS_repB_283080_sRBC_TGACT	'
+ NAMElistSIZE='length	sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG	sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA	sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT	sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA	sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT	sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG	sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA	sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT	sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG	sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG	sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA	sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA	sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC	sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA	sRNAseq_HsBam_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC	sRNAseq_HsBam_ControlKD_00hAHS_repB_283080_sRBC_GTCAG	sRNAseq_HsBam_ControlKD_00hAHS_repC_283081_sRBC_CAGTG	sRNAseq_HsBam_ControlKD_68hAHS_repD_283082_sRBC_TGACT	sRNAseq_HsBam_PiwiKD_68hAHS_repB_283080_sRBC_ATGGA	sRNAseq_HsBam_ControlKD_68hAHS_repB_283080_sRBC_TGACT	'
+ tr ' ' '\t'
+ echo annotation sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA sRNAseq_HsBam_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC sRNAseq_HsBam_ControlKD_00hAHS_repB_283080_sRBC_GTCAG sRNAseq_HsBam_ControlKD_00hAHS_repC_283081_sRBC_CAGTG sRNAseq_HsBam_ControlKD_68hAHS_repD_283082_sRBC_TGACT sRNAseq_HsBam_PiwiKD_68hAHS_repB_283080_sRBC_ATGGA sRNAseq_HsBam_ControlKD_68hAHS_repB_283080_sRBC_TGACT
+ for CATEGORY in adaptor_dimer artifact_filtered length_filtered_short length_filtered_long N_filtered reads_after_filtering reads_not_mapped
+ SWITCH=N
+ read LINE
++ cut -f 2
++ tr ' ' '\t'
++ echo /faststorage/project/PAN_illumina/tmp/sRBC_trimmed/283079_S7_R1_001_CAGTG.fasta.gz sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG
+ NAME=sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG/
+ [[ N == N ]]
++ awk '{ print $NF}'
++ grep adaptor_dimer
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG/log.txt
+ X='0
0'
+ Xlist='adaptor_dimer 0
0'
+ SWITCH=Y
+ read LINE
++ cut -f 2
++ tr ' ' '\t'
++ echo /faststorage/project/PAN_illumina/tmp/sRBC_trimmed/283083_S11_R1_001_ATGGA.fasta.gz sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA
+ NAME=sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA/
+ [[ Y == N ]]
++ awk '{ print $NF}'
++ grep adaptor_dimer
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA/log.txt
+ X='0
0'
+ Xlist='adaptor_dimer 0
0 0
0'
+ read LINE
++ cut -f 2
++ tr ' ' '\t'
++ echo /faststorage/project/PAN_illumina/tmp/sRBC_trimmed/283079_S7_R1_001_GGTAT.fasta.gz sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT
+ NAME=sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT/
+ [[ Y == N ]]
++ awk '{ print $NF}'
++ grep adaptor_dimer
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT/log.txt
+ X='0
0'
+ Xlist='adaptor_dimer 0
0 0
0 0
0'
+ read LINE
++ cut -f 2
++ tr ' ' '\t'
++ echo /faststorage/project/PAN_illumina/tmp/sRBC_trimmed/283079_S7_R1_001_AGCAA.fasta.gz sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA
+ NAME=sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA/
+ [[ Y == N ]]
++ awk '{ print $NF}'
++ grep adaptor_dimer
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA/log.txt
+ X='0
0'
+ Xlist='adaptor_dimer 0
0 0
0 0
0 0
0'
+ read LINE
++ cut -f 2
++ tr ' ' '\t'
++ echo /faststorage/project/PAN_illumina/tmp/sRBC_trimmed/283081_S9_R1_001_GGTAT.fasta.gz sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT
+ NAME=sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT/
+ [[ Y == N ]]
++ awk '{ print $NF}'
++ grep adaptor_dimer
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT/log.txt
+ X='0
0'
+ Xlist='adaptor_dimer 0
0 0
0 0
0 0
0 0
0'
+ read LINE
++ cut -f 2
++ tr ' ' '\t'
++ echo /faststorage/project/PAN_illumina/tmp/sRBC_trimmed/283083_S11_R1_001_ACGAG.fasta.gz sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG
+ NAME=sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG/
+ [[ Y == N ]]
++ awk '{ print $NF}'
++ grep adaptor_dimer
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG/log.txt
+ X='0
0'
+ Xlist='adaptor_dimer 0
0 0
0 0
0 0
0 0
0 0
0'
+ read LINE
++ cut -f 2
++ tr ' ' '\t'
++ echo /faststorage/project/PAN_illumina/tmp/sRBC_trimmed/283081_S9_R1_001_AGCAA.fasta.gz sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA
+ NAME=sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA/
+ [[ Y == N ]]
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA/log.txt
++ grep adaptor_dimer
++ awk '{ print $NF}'
+ X='0
0'
+ Xlist='adaptor_dimer 0
0 0
0 0
0 0
0 0
0 0
0 0
0'
+ read LINE
++ cut -f 2
++ tr ' ' '\t'
++ echo /faststorage/project/PAN_illumina/tmp/sRBC_trimmed/283083_S11_R1_001_CTGAT.fasta.gz sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT
+ NAME=sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT/
+ [[ Y == N ]]
++ awk '{ print $NF}'
++ grep adaptor_dimer
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT/log.txt
+ X='0
0'
+ Xlist='adaptor_dimer 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0'
+ read LINE
++ cut -f 2
++ tr ' ' '\t'
++ echo /faststorage/project/PAN_illumina/tmp/sRBC_trimmed/283082_S10_R1_001_GTCAG.fasta.gz sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG
+ NAME=sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG/
+ [[ Y == N ]]
++ awk '{ print $NF}'
++ grep adaptor_dimer
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG/log.txt
+ X='0
0'
+ Xlist='adaptor_dimer 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0'
+ read LINE
++ cut -f 2
++ tr ' ' '\t'
++ echo /faststorage/project/PAN_illumina/tmp/sRBC_trimmed/283083_S11_R1_001_GAACG.fasta.gz sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG
+ NAME=sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG/
+ [[ Y == N ]]
++ awk '{ print $NF}'
++ grep adaptor_dimer
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG/log.txt
+ X='0
0'
+ Xlist='adaptor_dimer 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0'
+ read LINE
++ cut -f 2
++ tr ' ' '\t'
++ echo /faststorage/project/PAN_illumina/tmp/sRBC_trimmed/283081_S9_R1_001_TACCA.fasta.gz sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA
+ NAME=sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA/
+ [[ Y == N ]]
++ awk '{ print $NF}'
++ grep adaptor_dimer
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA/log.txt
+ X='0
0'
+ Xlist='adaptor_dimer 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0'
+ read LINE
++ cut -f 2
++ tr ' ' '\t'
++ echo /faststorage/project/PAN_illumina/tmp/sRBC_trimmed/283082_S10_R1_001_ATGGA.fasta.gz sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA
+ NAME=sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA/
+ [[ Y == N ]]
++ awk '{ print $NF}'
++ grep adaptor_dimer
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA/log.txt
+ X='0
0'
+ Xlist='adaptor_dimer 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0'
+ read LINE
++ cut -f 2
++ tr ' ' '\t'
++ echo /faststorage/project/PAN_illumina/tmp/sRBC_trimmed/283082_S10_R1_001_CGTTC.fasta.gz sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC
+ NAME=sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC/
+ [[ Y == N ]]
++ awk '{ print $NF}'
++ grep adaptor_dimer
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC/log.txt
+ X='0
0'
+ Xlist='adaptor_dimer 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0'
+ read LINE
++ cut -f 2
++ tr ' ' '\t'
++ echo /faststorage/project/PAN_illumina/tmp/sRBC_trimmed/283079_S7_R1_001_TACCA.fasta.gz sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA
+ NAME=sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA/
+ [[ Y == N ]]
++ awk '{ print $NF}'
++ grep adaptor_dimer
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA/log.txt
+ X='0
0'
+ Xlist='adaptor_dimer 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0'
+ read LINE
++ cut -f 2
++ tr ' ' '\t'
++ echo /faststorage/project/PAN_illumina/tmp/sRBC_trimmed/283080_S8_R1_001_CGTTC.fasta.gz sRNAseq_HsBam_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC
+ NAME=sRNAseq_HsBam_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC/
+ [[ Y == N ]]
++ awk '{ print $NF}'
++ grep adaptor_dimer
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC/log.txt
+ X='0
0'
+ Xlist='adaptor_dimer 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0'
+ read LINE
++ cut -f 2
++ tr ' ' '\t'
++ echo /faststorage/project/PAN_illumina/tmp/sRBC_trimmed/283080_S8_R1_001_GTCAG.fasta.gz sRNAseq_HsBam_ControlKD_00hAHS_repB_283080_sRBC_GTCAG
+ NAME=sRNAseq_HsBam_ControlKD_00hAHS_repB_283080_sRBC_GTCAG
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repB_283080_sRBC_GTCAG/
+ [[ Y == N ]]
++ awk '{ print $NF}'
++ grep adaptor_dimer
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repB_283080_sRBC_GTCAG/log.txt
+ X='0
0'
+ Xlist='adaptor_dimer 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0'
+ read LINE
++ cut -f 2
++ tr ' ' '\t'
++ echo /faststorage/project/PAN_illumina/tmp/sRBC_trimmed/283081_S9_R1_001_CAGTG.fasta.gz sRNAseq_HsBam_ControlKD_00hAHS_repC_283081_sRBC_CAGTG
+ NAME=sRNAseq_HsBam_ControlKD_00hAHS_repC_283081_sRBC_CAGTG
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repC_283081_sRBC_CAGTG/
+ [[ Y == N ]]
++ awk '{ print $NF}'
++ grep adaptor_dimer
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repC_283081_sRBC_CAGTG/log.txt
+ X='0
0'
+ Xlist='adaptor_dimer 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0'
+ read LINE
++ cut -f 2
++ tr ' ' '\t'
++ echo /faststorage/project/PAN_illumina/tmp/sRBC_trimmed/283082_S10_R1_001_TGACT.fasta.gz sRNAseq_HsBam_ControlKD_68hAHS_repD_283082_sRBC_TGACT
+ NAME=sRNAseq_HsBam_ControlKD_68hAHS_repD_283082_sRBC_TGACT
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repD_283082_sRBC_TGACT/
+ [[ Y == N ]]
++ awk '{ print $NF}'
++ grep adaptor_dimer
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repD_283082_sRBC_TGACT/log.txt
+ X='0
0'
+ Xlist='adaptor_dimer 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0'
+ read LINE
++ cut -f 2
++ tr ' ' '\t'
++ echo /faststorage/project/PAN_illumina/tmp/sRBC_trimmed/283080_S8_R1_001_ATGGA.fasta.gz sRNAseq_HsBam_PiwiKD_68hAHS_repB_283080_sRBC_ATGGA
+ NAME=sRNAseq_HsBam_PiwiKD_68hAHS_repB_283080_sRBC_ATGGA
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repB_283080_sRBC_ATGGA/
+ [[ Y == N ]]
++ awk '{ print $NF}'
++ grep adaptor_dimer
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repB_283080_sRBC_ATGGA/log.txt
+ X='0
0'
+ Xlist='adaptor_dimer 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0'
+ read LINE
++ cut -f 2
++ tr ' ' '\t'
++ echo /faststorage/project/PAN_illumina/tmp/sRBC_trimmed/283080_S8_R1_001_TGACT.fasta.gz sRNAseq_HsBam_ControlKD_68hAHS_repB_283080_sRBC_TGACT
+ NAME=sRNAseq_HsBam_ControlKD_68hAHS_repB_283080_sRBC_TGACT
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repB_283080_sRBC_TGACT/
+ [[ Y == N ]]
++ awk '{ print $NF}'
++ grep adaptor_dimer
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repB_283080_sRBC_TGACT/log.txt
+ X='0
0'
+ Xlist='adaptor_dimer 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0'
+ read LINE
+ tr ' ' '\t'
+ echo adaptor_dimer 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
+ for CATEGORY in adaptor_dimer artifact_filtered length_filtered_short length_filtered_long N_filtered reads_after_filtering reads_not_mapped
+ SWITCH=N
+ read LINE
++ cut -f 2
++ tr ' ' '\t'
++ echo /faststorage/project/PAN_illumina/tmp/sRBC_trimmed/283079_S7_R1_001_CAGTG.fasta.gz sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG
+ NAME=sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG/
+ [[ N == N ]]
++ awk '{ print $NF}'
++ grep artifact_filtered
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG/log.txt
+ X='2708
2708'
+ Xlist='artifact_filtered 2708
2708'
+ SWITCH=Y
+ read LINE
++ cut -f 2
++ tr ' ' '\t'
++ echo /faststorage/project/PAN_illumina/tmp/sRBC_trimmed/283083_S11_R1_001_ATGGA.fasta.gz sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA
+ NAME=sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA/
+ [[ Y == N ]]
++ awk '{ print $NF}'
++ grep artifact_filtered
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA/log.txt
+ X='3135
3135'
+ Xlist='artifact_filtered 2708
2708 3135
3135'
+ read LINE
++ cut -f 2
++ tr ' ' '\t'
++ echo /faststorage/project/PAN_illumina/tmp/sRBC_trimmed/283079_S7_R1_001_GGTAT.fasta.gz sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT
+ NAME=sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT/
+ [[ Y == N ]]
++ awk '{ print $NF}'
++ grep artifact_filtered
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT/log.txt
+ X='960
960'
+ Xlist='artifact_filtered 2708
2708 3135
3135 960
960'
+ read LINE
++ tr ' ' '\t'
++ echo /faststorage/project/PAN_illumina/tmp/sRBC_trimmed/283079_S7_R1_001_AGCAA.fasta.gz sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA
++ cut -f 2
+ NAME=sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA/
+ [[ Y == N ]]
++ awk '{ print $NF}'
++ grep artifact_filtered
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA/log.txt
+ X='3833
3833'
+ Xlist='artifact_filtered 2708
2708 3135
3135 960
960 3833
3833'
+ read LINE
++ cut -f 2
++ tr ' ' '\t'
++ echo /faststorage/project/PAN_illumina/tmp/sRBC_trimmed/283081_S9_R1_001_GGTAT.fasta.gz sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT
+ NAME=sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT/
+ [[ Y == N ]]
++ awk '{ print $NF}'
++ grep artifact_filtered
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT/log.txt
+ X='1178
1178'
+ Xlist='artifact_filtered 2708
2708 3135
3135 960
960 3833
3833 1178
1178'
+ read LINE
++ cut -f 2
++ tr ' ' '\t'
++ echo /faststorage/project/PAN_illumina/tmp/sRBC_trimmed/283083_S11_R1_001_ACGAG.fasta.gz sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG
+ NAME=sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG/
+ [[ Y == N ]]
++ awk '{ print $NF}'
++ grep artifact_filtered
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG/log.txt
+ X='919
919'
+ Xlist='artifact_filtered 2708
2708 3135
3135 960
960 3833
3833 1178
1178 919
919'
+ read LINE
++ cut -f 2
++ tr ' ' '\t'
++ echo /faststorage/project/PAN_illumina/tmp/sRBC_trimmed/283081_S9_R1_001_AGCAA.fasta.gz sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA
+ NAME=sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA/
+ [[ Y == N ]]
++ awk '{ print $NF}'
++ grep artifact_filtered
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA/log.txt
+ X='2149
2149'
+ Xlist='artifact_filtered 2708
2708 3135
3135 960
960 3833
3833 1178
1178 919
919 2149
2149'
+ read LINE
++ cut -f 2
++ tr ' ' '\t'
++ echo /faststorage/project/PAN_illumina/tmp/sRBC_trimmed/283083_S11_R1_001_CTGAT.fasta.gz sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT
+ NAME=sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT/
+ [[ Y == N ]]
++ awk '{ print $NF}'
++ grep artifact_filtered
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT/log.txt
+ X='1635
1635'
+ Xlist='artifact_filtered 2708
2708 3135
3135 960
960 3833
3833 1178
1178 919
919 2149
2149 1635
1635'
+ read LINE
++ cut -f 2
++ tr ' ' '\t'
++ echo /faststorage/project/PAN_illumina/tmp/sRBC_trimmed/283082_S10_R1_001_GTCAG.fasta.gz sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG
+ NAME=sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG/
+ [[ Y == N ]]
++ awk '{ print $NF}'
++ grep artifact_filtered
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG/log.txt
+ X='2160
2160'
+ Xlist='artifact_filtered 2708
2708 3135
3135 960
960 3833
3833 1178
1178 919
919 2149
2149 1635
1635 2160
2160'
+ read LINE
++ cut -f 2
++ tr ' ' '\t'
++ echo /faststorage/project/PAN_illumina/tmp/sRBC_trimmed/283083_S11_R1_001_GAACG.fasta.gz sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG
+ NAME=sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG/
+ [[ Y == N ]]
++ awk '{ print $NF}'
++ grep artifact_filtered
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG/log.txt
+ X='5268
5268'
+ Xlist='artifact_filtered 2708
2708 3135
3135 960
960 3833
3833 1178
1178 919
919 2149
2149 1635
1635 2160
2160 5268
5268'
+ read LINE
++ cut -f 2
++ tr ' ' '\t'
++ echo /faststorage/project/PAN_illumina/tmp/sRBC_trimmed/283081_S9_R1_001_TACCA.fasta.gz sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA
+ NAME=sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA/
+ [[ Y == N ]]
++ awk '{ print $NF}'
++ grep artifact_filtered
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA/log.txt
+ X='1140
1140'
+ Xlist='artifact_filtered 2708
2708 3135
3135 960
960 3833
3833 1178
1178 919
919 2149
2149 1635
1635 2160
2160 5268
5268 1140
1140'
+ read LINE
++ cut -f 2
++ tr ' ' '\t'
++ echo /faststorage/project/PAN_illumina/tmp/sRBC_trimmed/283082_S10_R1_001_ATGGA.fasta.gz sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA
+ NAME=sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA/
+ [[ Y == N ]]
++ awk '{ print $NF}'
++ grep artifact_filtered
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA/log.txt
+ X='1010
1010'
+ Xlist='artifact_filtered 2708
2708 3135
3135 960
960 3833
3833 1178
1178 919
919 2149
2149 1635
1635 2160
2160 5268
5268 1140
1140 1010
1010'
+ read LINE
++ cut -f 2
++ tr ' ' '\t'
++ echo /faststorage/project/PAN_illumina/tmp/sRBC_trimmed/283082_S10_R1_001_CGTTC.fasta.gz sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC
+ NAME=sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC/
+ [[ Y == N ]]
++ awk '{ print $NF}'
++ grep artifact_filtered
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC/log.txt
+ X='1091
1091'
+ Xlist='artifact_filtered 2708
2708 3135
3135 960
960 3833
3833 1178
1178 919
919 2149
2149 1635
1635 2160
2160 5268
5268 1140
1140 1010
1010 1091
1091'
+ read LINE
++ cut -f 2
++ tr ' ' '\t'
++ echo /faststorage/project/PAN_illumina/tmp/sRBC_trimmed/283079_S7_R1_001_TACCA.fasta.gz sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA
+ NAME=sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA/
+ [[ Y == N ]]
++ awk '{ print $NF}'
++ grep artifact_filtered
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA/log.txt
+ X='882
882'
+ Xlist='artifact_filtered 2708
2708 3135
3135 960
960 3833
3833 1178
1178 919
919 2149
2149 1635
1635 2160
2160 5268
5268 1140
1140 1010
1010 1091
1091 882
882'
+ read LINE
++ cut -f 2
++ tr ' ' '\t'
++ echo /faststorage/project/PAN_illumina/tmp/sRBC_trimmed/283080_S8_R1_001_CGTTC.fasta.gz sRNAseq_HsBam_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC
+ NAME=sRNAseq_HsBam_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC/
+ [[ Y == N ]]
++ awk '{ print $NF}'
++ grep artifact_filtered
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC/log.txt
+ X='645
645'
+ Xlist='artifact_filtered 2708
2708 3135
3135 960
960 3833
3833 1178
1178 919
919 2149
2149 1635
1635 2160
2160 5268
5268 1140
1140 1010
1010 1091
1091 882
882 645
645'
+ read LINE
++ cut -f 2
++ tr ' ' '\t'
++ echo /faststorage/project/PAN_illumina/tmp/sRBC_trimmed/283080_S8_R1_001_GTCAG.fasta.gz sRNAseq_HsBam_ControlKD_00hAHS_repB_283080_sRBC_GTCAG
+ NAME=sRNAseq_HsBam_ControlKD_00hAHS_repB_283080_sRBC_GTCAG
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repB_283080_sRBC_GTCAG/
+ [[ Y == N ]]
++ awk '{ print $NF}'
++ grep artifact_filtered
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repB_283080_sRBC_GTCAG/log.txt
+ X='2175
2175'
+ Xlist='artifact_filtered 2708
2708 3135
3135 960
960 3833
3833 1178
1178 919
919 2149
2149 1635
1635 2160
2160 5268
5268 1140
1140 1010
1010 1091
1091 882
882 645
645 2175
2175'
+ read LINE
++ cut -f 2
++ tr ' ' '\t'
++ echo /faststorage/project/PAN_illumina/tmp/sRBC_trimmed/283081_S9_R1_001_CAGTG.fasta.gz sRNAseq_HsBam_ControlKD_00hAHS_repC_283081_sRBC_CAGTG
+ NAME=sRNAseq_HsBam_ControlKD_00hAHS_repC_283081_sRBC_CAGTG
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repC_283081_sRBC_CAGTG/
+ [[ Y == N ]]
++ awk '{ print $NF}'
++ grep artifact_filtered
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repC_283081_sRBC_CAGTG/log.txt
+ X='3105
3105'
+ Xlist='artifact_filtered 2708
2708 3135
3135 960
960 3833
3833 1178
1178 919
919 2149
2149 1635
1635 2160
2160 5268
5268 1140
1140 1010
1010 1091
1091 882
882 645
645 2175
2175 3105
3105'
+ read LINE
++ cut -f 2
++ tr ' ' '\t'
++ echo /faststorage/project/PAN_illumina/tmp/sRBC_trimmed/283082_S10_R1_001_TGACT.fasta.gz sRNAseq_HsBam_ControlKD_68hAHS_repD_283082_sRBC_TGACT
+ NAME=sRNAseq_HsBam_ControlKD_68hAHS_repD_283082_sRBC_TGACT
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repD_283082_sRBC_TGACT/
+ [[ Y == N ]]
++ awk '{ print $NF}'
++ grep artifact_filtered
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repD_283082_sRBC_TGACT/log.txt
+ X='5537
5537'
+ Xlist='artifact_filtered 2708
2708 3135
3135 960
960 3833
3833 1178
1178 919
919 2149
2149 1635
1635 2160
2160 5268
5268 1140
1140 1010
1010 1091
1091 882
882 645
645 2175
2175 3105
3105 5537
5537'
+ read LINE
++ cut -f 2
++ tr ' ' '\t'
++ echo /faststorage/project/PAN_illumina/tmp/sRBC_trimmed/283080_S8_R1_001_ATGGA.fasta.gz sRNAseq_HsBam_PiwiKD_68hAHS_repB_283080_sRBC_ATGGA
+ NAME=sRNAseq_HsBam_PiwiKD_68hAHS_repB_283080_sRBC_ATGGA
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repB_283080_sRBC_ATGGA/
+ [[ Y == N ]]
++ awk '{ print $NF}'
++ grep artifact_filtered
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repB_283080_sRBC_ATGGA/log.txt
+ X='587
587'
+ Xlist='artifact_filtered 2708
2708 3135
3135 960
960 3833
3833 1178
1178 919
919 2149
2149 1635
1635 2160
2160 5268
5268 1140
1140 1010
1010 1091
1091 882
882 645
645 2175
2175 3105
3105 5537
5537 587
587'
+ read LINE
++ cut -f 2
++ tr ' ' '\t'
++ echo /faststorage/project/PAN_illumina/tmp/sRBC_trimmed/283080_S8_R1_001_TGACT.fasta.gz sRNAseq_HsBam_ControlKD_68hAHS_repB_283080_sRBC_TGACT
+ NAME=sRNAseq_HsBam_ControlKD_68hAHS_repB_283080_sRBC_TGACT
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repB_283080_sRBC_TGACT/
+ [[ Y == N ]]
++ awk '{ print $NF}'
++ grep artifact_filtered
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repB_283080_sRBC_TGACT/log.txt
+ X='5790
5790'
+ Xlist='artifact_filtered 2708
2708 3135
3135 960
960 3833
3833 1178
1178 919
919 2149
2149 1635
1635 2160
2160 5268
5268 1140
1140 1010
1010 1091
1091 882
882 645
645 2175
2175 3105
3105 5537
5537 587
587 5790
5790'
+ read LINE
+ tr ' ' '\t'
+ echo artifact_filtered 2708 2708 3135 3135 960 960 3833 3833 1178 1178 919 919 2149 2149 1635 1635 2160 2160 5268 5268 1140 1140 1010 1010 1091 1091 882 882 645 645 2175 2175 3105 3105 5537 5537 587 587 5790 5790
+ for CATEGORY in adaptor_dimer artifact_filtered length_filtered_short length_filtered_long N_filtered reads_after_filtering reads_not_mapped
+ SWITCH=N
+ read LINE
++ cut -f 2
++ tr ' ' '\t'
++ echo /faststorage/project/PAN_illumina/tmp/sRBC_trimmed/283079_S7_R1_001_CAGTG.fasta.gz sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG
+ NAME=sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG/
+ [[ N == N ]]
++ awk '{ print $NF}'
++ grep length_filtered_short
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG/log.txt
+ X='0
0'
+ Xlist='length_filtered_short 0
0'
+ SWITCH=Y
+ read LINE
++ cut -f 2
++ tr ' ' '\t'
++ echo /faststorage/project/PAN_illumina/tmp/sRBC_trimmed/283083_S11_R1_001_ATGGA.fasta.gz sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA
+ NAME=sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA/
+ [[ Y == N ]]
++ awk '{ print $NF}'
++ grep length_filtered_short
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA/log.txt
+ X='0
0'
+ Xlist='length_filtered_short 0
0 0
0'
+ read LINE
++ cut -f 2
++ tr ' ' '\t'
++ echo /faststorage/project/PAN_illumina/tmp/sRBC_trimmed/283079_S7_R1_001_GGTAT.fasta.gz sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT
+ NAME=sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT/
+ [[ Y == N ]]
++ awk '{ print $NF}'
++ grep length_filtered_short
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT/log.txt
+ X='0
0'
+ Xlist='length_filtered_short 0
0 0
0 0
0'
+ read LINE
++ cut -f 2
++ tr ' ' '\t'
++ echo /faststorage/project/PAN_illumina/tmp/sRBC_trimmed/283079_S7_R1_001_AGCAA.fasta.gz sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA
+ NAME=sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA/
+ [[ Y == N ]]
++ awk '{ print $NF}'
++ grep length_filtered_short
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA/log.txt
+ X='0
0'
+ Xlist='length_filtered_short 0
0 0
0 0
0 0
0'
+ read LINE
++ cut -f 2
++ tr ' ' '\t'
++ echo /faststorage/project/PAN_illumina/tmp/sRBC_trimmed/283081_S9_R1_001_GGTAT.fasta.gz sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT
+ NAME=sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT/
+ [[ Y == N ]]
++ awk '{ print $NF}'
++ grep length_filtered_short
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT/log.txt
+ X='0
0'
+ Xlist='length_filtered_short 0
0 0
0 0
0 0
0 0
0'
+ read LINE
++ cut -f 2
++ tr ' ' '\t'
++ echo /faststorage/project/PAN_illumina/tmp/sRBC_trimmed/283083_S11_R1_001_ACGAG.fasta.gz sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG
+ NAME=sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG/
+ [[ Y == N ]]
++ awk '{ print $NF}'
++ grep length_filtered_short
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG/log.txt
+ X='0
0'
+ Xlist='length_filtered_short 0
0 0
0 0
0 0
0 0
0 0
0'
+ read LINE
++ cut -f 2
++ tr ' ' '\t'
++ echo /faststorage/project/PAN_illumina/tmp/sRBC_trimmed/283081_S9_R1_001_AGCAA.fasta.gz sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA
+ NAME=sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA/
+ [[ Y == N ]]
++ awk '{ print $NF}'
++ grep length_filtered_short
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA/log.txt
+ X='0
0'
+ Xlist='length_filtered_short 0
0 0
0 0
0 0
0 0
0 0
0 0
0'
+ read LINE
++ cut -f 2
++ tr ' ' '\t'
++ echo /faststorage/project/PAN_illumina/tmp/sRBC_trimmed/283083_S11_R1_001_CTGAT.fasta.gz sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT
+ NAME=sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT/
+ [[ Y == N ]]
++ awk '{ print $NF}'
++ grep length_filtered_short
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT/log.txt
+ X='0
0'
+ Xlist='length_filtered_short 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0'
+ read LINE
++ echo /faststorage/project/PAN_illumina/tmp/sRBC_trimmed/283082_S10_R1_001_GTCAG.fasta.gz sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG
++ tr ' ' '\t'
++ cut -f 2
+ NAME=sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG/
+ [[ Y == N ]]
++ awk '{ print $NF}'
++ grep length_filtered_short
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG/log.txt
+ X='0
0'
+ Xlist='length_filtered_short 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0'
+ read LINE
++ cut -f 2
++ tr ' ' '\t'
++ echo /faststorage/project/PAN_illumina/tmp/sRBC_trimmed/283083_S11_R1_001_GAACG.fasta.gz sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG
+ NAME=sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG/
+ [[ Y == N ]]
++ awk '{ print $NF}'
++ grep length_filtered_short
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG/log.txt
+ X='0
0'
+ Xlist='length_filtered_short 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0'
+ read LINE
++ cut -f 2
++ tr ' ' '\t'
++ echo /faststorage/project/PAN_illumina/tmp/sRBC_trimmed/283081_S9_R1_001_TACCA.fasta.gz sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA
+ NAME=sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA/
+ [[ Y == N ]]
++ awk '{ print $NF}'
++ grep length_filtered_short
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA/log.txt
+ X='0
0'
+ Xlist='length_filtered_short 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0'
+ read LINE
++ cut -f 2
++ tr ' ' '\t'
++ echo /faststorage/project/PAN_illumina/tmp/sRBC_trimmed/283082_S10_R1_001_ATGGA.fasta.gz sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA
+ NAME=sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA/
+ [[ Y == N ]]
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA/log.txt
++ awk '{ print $NF}'
++ grep length_filtered_short
+ X='0
0'
+ Xlist='length_filtered_short 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0'
+ read LINE
++ cut -f 2
++ tr ' ' '\t'
++ echo /faststorage/project/PAN_illumina/tmp/sRBC_trimmed/283082_S10_R1_001_CGTTC.fasta.gz sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC
+ NAME=sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC/
+ [[ Y == N ]]
++ awk '{ print $NF}'
++ grep length_filtered_short
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC/log.txt
+ X='0
0'
+ Xlist='length_filtered_short 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0'
+ read LINE
++ cut -f 2
++ tr ' ' '\t'
++ echo /faststorage/project/PAN_illumina/tmp/sRBC_trimmed/283079_S7_R1_001_TACCA.fasta.gz sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA
+ NAME=sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA/
+ [[ Y == N ]]
++ awk '{ print $NF}'
++ grep length_filtered_short
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA/log.txt
+ X='0
0'
+ Xlist='length_filtered_short 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0'
+ read LINE
++ cut -f 2
++ tr ' ' '\t'
++ echo /faststorage/project/PAN_illumina/tmp/sRBC_trimmed/283080_S8_R1_001_CGTTC.fasta.gz sRNAseq_HsBam_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC
+ NAME=sRNAseq_HsBam_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC/
+ [[ Y == N ]]
++ awk '{ print $NF}'
++ grep length_filtered_short
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC/log.txt
+ X='0
0'
+ Xlist='length_filtered_short 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0'
+ read LINE
++ cut -f 2
++ tr ' ' '\t'
++ echo /faststorage/project/PAN_illumina/tmp/sRBC_trimmed/283080_S8_R1_001_GTCAG.fasta.gz sRNAseq_HsBam_ControlKD_00hAHS_repB_283080_sRBC_GTCAG
+ NAME=sRNAseq_HsBam_ControlKD_00hAHS_repB_283080_sRBC_GTCAG
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repB_283080_sRBC_GTCAG/
+ [[ Y == N ]]
++ awk '{ print $NF}'
++ grep length_filtered_short
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repB_283080_sRBC_GTCAG/log.txt
+ X='0
0'
+ Xlist='length_filtered_short 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0'
+ read LINE
++ cut -f 2
++ tr ' ' '\t'
++ echo /faststorage/project/PAN_illumina/tmp/sRBC_trimmed/283081_S9_R1_001_CAGTG.fasta.gz sRNAseq_HsBam_ControlKD_00hAHS_repC_283081_sRBC_CAGTG
+ NAME=sRNAseq_HsBam_ControlKD_00hAHS_repC_283081_sRBC_CAGTG
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repC_283081_sRBC_CAGTG/
+ [[ Y == N ]]
++ awk '{ print $NF}'
++ grep length_filtered_short
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repC_283081_sRBC_CAGTG/log.txt
+ X='0
0'
+ Xlist='length_filtered_short 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0'
+ read LINE
++ cut -f 2
++ tr ' ' '\t'
++ echo /faststorage/project/PAN_illumina/tmp/sRBC_trimmed/283082_S10_R1_001_TGACT.fasta.gz sRNAseq_HsBam_ControlKD_68hAHS_repD_283082_sRBC_TGACT
+ NAME=sRNAseq_HsBam_ControlKD_68hAHS_repD_283082_sRBC_TGACT
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repD_283082_sRBC_TGACT/
+ [[ Y == N ]]
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repD_283082_sRBC_TGACT/log.txt
++ awk '{ print $NF}'
++ grep length_filtered_short
+ X='0
0'
+ Xlist='length_filtered_short 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0'
+ read LINE
++ cut -f 2
++ tr ' ' '\t'
++ echo /faststorage/project/PAN_illumina/tmp/sRBC_trimmed/283080_S8_R1_001_ATGGA.fasta.gz sRNAseq_HsBam_PiwiKD_68hAHS_repB_283080_sRBC_ATGGA
+ NAME=sRNAseq_HsBam_PiwiKD_68hAHS_repB_283080_sRBC_ATGGA
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repB_283080_sRBC_ATGGA/
+ [[ Y == N ]]
++ awk '{ print $NF}'
++ grep length_filtered_short
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repB_283080_sRBC_ATGGA/log.txt
+ X='0
0'
+ Xlist='length_filtered_short 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0'
+ read LINE
++ echo /faststorage/project/PAN_illumina/tmp/sRBC_trimmed/283080_S8_R1_001_TGACT.fasta.gz sRNAseq_HsBam_ControlKD_68hAHS_repB_283080_sRBC_TGACT
++ tr ' ' '\t'
++ cut -f 2
+ NAME=sRNAseq_HsBam_ControlKD_68hAHS_repB_283080_sRBC_TGACT
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repB_283080_sRBC_TGACT/
+ [[ Y == N ]]
++ awk '{ print $NF}'
++ grep length_filtered_short
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repB_283080_sRBC_TGACT/log.txt
+ X='0
0'
+ Xlist='length_filtered_short 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0'
+ read LINE
+ tr ' ' '\t'
+ echo length_filtered_short 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
+ for CATEGORY in adaptor_dimer artifact_filtered length_filtered_short length_filtered_long N_filtered reads_after_filtering reads_not_mapped
+ SWITCH=N
+ read LINE
++ cut -f 2
++ tr ' ' '\t'
++ echo /faststorage/project/PAN_illumina/tmp/sRBC_trimmed/283079_S7_R1_001_CAGTG.fasta.gz sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG
+ NAME=sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG/
+ [[ N == N ]]
++ awk '{ print $NF}'
++ grep length_filtered_long
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG/log.txt
+ X='0
0'
+ Xlist='length_filtered_long 0
0'
+ SWITCH=Y
+ read LINE
++ tr ' ' '\t'
++ cut -f 2
++ echo /faststorage/project/PAN_illumina/tmp/sRBC_trimmed/283083_S11_R1_001_ATGGA.fasta.gz sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA
+ NAME=sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA/
+ [[ Y == N ]]
++ awk '{ print $NF}'
++ grep length_filtered_long
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA/log.txt
+ X='0
0'
+ Xlist='length_filtered_long 0
0 0
0'
+ read LINE
++ cut -f 2
++ tr ' ' '\t'
++ echo /faststorage/project/PAN_illumina/tmp/sRBC_trimmed/283079_S7_R1_001_GGTAT.fasta.gz sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT
+ NAME=sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT/
+ [[ Y == N ]]
++ awk '{ print $NF}'
++ grep length_filtered_long
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT/log.txt
+ X='0
0'
+ Xlist='length_filtered_long 0
0 0
0 0
0'
+ read LINE
++ cut -f 2
++ tr ' ' '\t'
++ echo /faststorage/project/PAN_illumina/tmp/sRBC_trimmed/283079_S7_R1_001_AGCAA.fasta.gz sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA
+ NAME=sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA/
+ [[ Y == N ]]
++ awk '{ print $NF}'
++ grep length_filtered_long
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA/log.txt
+ X='0
0'
+ Xlist='length_filtered_long 0
0 0
0 0
0 0
0'
+ read LINE
++ cut -f 2
++ tr ' ' '\t'
++ echo /faststorage/project/PAN_illumina/tmp/sRBC_trimmed/283081_S9_R1_001_GGTAT.fasta.gz sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT
+ NAME=sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT/
+ [[ Y == N ]]
++ awk '{ print $NF}'
++ grep length_filtered_long
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT/log.txt
+ X='0
0'
+ Xlist='length_filtered_long 0
0 0
0 0
0 0
0 0
0'
+ read LINE
++ cut -f 2
++ tr ' ' '\t'
++ echo /faststorage/project/PAN_illumina/tmp/sRBC_trimmed/283083_S11_R1_001_ACGAG.fasta.gz sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG
+ NAME=sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG/
+ [[ Y == N ]]
++ awk '{ print $NF}'
++ grep length_filtered_long
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG/log.txt
+ X='0
0'
+ Xlist='length_filtered_long 0
0 0
0 0
0 0
0 0
0 0
0'
+ read LINE
++ cut -f 2
++ tr ' ' '\t'
++ echo /faststorage/project/PAN_illumina/tmp/sRBC_trimmed/283081_S9_R1_001_AGCAA.fasta.gz sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA
+ NAME=sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA/
+ [[ Y == N ]]
++ awk '{ print $NF}'
++ grep length_filtered_long
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA/log.txt
+ X='0
0'
+ Xlist='length_filtered_long 0
0 0
0 0
0 0
0 0
0 0
0 0
0'
+ read LINE
++ cut -f 2
++ tr ' ' '\t'
++ echo /faststorage/project/PAN_illumina/tmp/sRBC_trimmed/283083_S11_R1_001_CTGAT.fasta.gz sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT
+ NAME=sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT/
+ [[ Y == N ]]
++ awk '{ print $NF}'
++ grep length_filtered_long
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT/log.txt
+ X='0
0'
+ Xlist='length_filtered_long 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0'
+ read LINE
++ cut -f 2
++ tr ' ' '\t'
++ echo /faststorage/project/PAN_illumina/tmp/sRBC_trimmed/283082_S10_R1_001_GTCAG.fasta.gz sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG
+ NAME=sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG/
+ [[ Y == N ]]
++ awk '{ print $NF}'
++ grep length_filtered_long
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG/log.txt
+ X='0
0'
+ Xlist='length_filtered_long 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0'
+ read LINE
++ cut -f 2
++ tr ' ' '\t'
++ echo /faststorage/project/PAN_illumina/tmp/sRBC_trimmed/283083_S11_R1_001_GAACG.fasta.gz sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG
+ NAME=sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG/
+ [[ Y == N ]]
++ awk '{ print $NF}'
++ grep length_filtered_long
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG/log.txt
+ X='0
0'
+ Xlist='length_filtered_long 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0'
+ read LINE
++ cut -f 2
++ tr ' ' '\t'
++ echo /faststorage/project/PAN_illumina/tmp/sRBC_trimmed/283081_S9_R1_001_TACCA.fasta.gz sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA
+ NAME=sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA/
+ [[ Y == N ]]
++ awk '{ print $NF}'
++ grep length_filtered_long
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA/log.txt
+ X='0
0'
+ Xlist='length_filtered_long 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0'
+ read LINE
++ cut -f 2
++ tr ' ' '\t'
++ echo /faststorage/project/PAN_illumina/tmp/sRBC_trimmed/283082_S10_R1_001_ATGGA.fasta.gz sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA
+ NAME=sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA/
+ [[ Y == N ]]
++ awk '{ print $NF}'
++ grep length_filtered_long
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA/log.txt
+ X='0
0'
+ Xlist='length_filtered_long 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0'
+ read LINE
++ cut -f 2
++ tr ' ' '\t'
++ echo /faststorage/project/PAN_illumina/tmp/sRBC_trimmed/283082_S10_R1_001_CGTTC.fasta.gz sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC
+ NAME=sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC/
+ [[ Y == N ]]
++ awk '{ print $NF}'
++ grep length_filtered_long
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC/log.txt
+ X='0
0'
+ Xlist='length_filtered_long 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0'
+ read LINE
++ cut -f 2
++ tr ' ' '\t'
++ echo /faststorage/project/PAN_illumina/tmp/sRBC_trimmed/283079_S7_R1_001_TACCA.fasta.gz sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA
+ NAME=sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA/
+ [[ Y == N ]]
++ awk '{ print $NF}'
++ grep length_filtered_long
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA/log.txt
+ X='0
0'
+ Xlist='length_filtered_long 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0'
+ read LINE
++ cut -f 2
++ tr ' ' '\t'
++ echo /faststorage/project/PAN_illumina/tmp/sRBC_trimmed/283080_S8_R1_001_CGTTC.fasta.gz sRNAseq_HsBam_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC
+ NAME=sRNAseq_HsBam_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC/
+ [[ Y == N ]]
++ awk '{ print $NF}'
++ grep length_filtered_long
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC/log.txt
+ X='0
0'
+ Xlist='length_filtered_long 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0'
+ read LINE
++ cut -f 2
++ tr ' ' '\t'
++ echo /faststorage/project/PAN_illumina/tmp/sRBC_trimmed/283080_S8_R1_001_GTCAG.fasta.gz sRNAseq_HsBam_ControlKD_00hAHS_repB_283080_sRBC_GTCAG
+ NAME=sRNAseq_HsBam_ControlKD_00hAHS_repB_283080_sRBC_GTCAG
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repB_283080_sRBC_GTCAG/
+ [[ Y == N ]]
++ awk '{ print $NF}'
++ grep length_filtered_long
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repB_283080_sRBC_GTCAG/log.txt
+ X='0
0'
+ Xlist='length_filtered_long 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0'
+ read LINE
++ cut -f 2
++ tr ' ' '\t'
++ echo /faststorage/project/PAN_illumina/tmp/sRBC_trimmed/283081_S9_R1_001_CAGTG.fasta.gz sRNAseq_HsBam_ControlKD_00hAHS_repC_283081_sRBC_CAGTG
+ NAME=sRNAseq_HsBam_ControlKD_00hAHS_repC_283081_sRBC_CAGTG
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repC_283081_sRBC_CAGTG/
+ [[ Y == N ]]
++ awk '{ print $NF}'
++ grep length_filtered_long
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repC_283081_sRBC_CAGTG/log.txt
+ X='0
0'
+ Xlist='length_filtered_long 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0'
+ read LINE
++ cut -f 2
++ tr ' ' '\t'
++ echo /faststorage/project/PAN_illumina/tmp/sRBC_trimmed/283082_S10_R1_001_TGACT.fasta.gz sRNAseq_HsBam_ControlKD_68hAHS_repD_283082_sRBC_TGACT
+ NAME=sRNAseq_HsBam_ControlKD_68hAHS_repD_283082_sRBC_TGACT
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repD_283082_sRBC_TGACT/
+ [[ Y == N ]]
++ awk '{ print $NF}'
++ grep length_filtered_long
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repD_283082_sRBC_TGACT/log.txt
+ X='0
0'
+ Xlist='length_filtered_long 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0'
+ read LINE
++ cut -f 2
++ tr ' ' '\t'
++ echo /faststorage/project/PAN_illumina/tmp/sRBC_trimmed/283080_S8_R1_001_ATGGA.fasta.gz sRNAseq_HsBam_PiwiKD_68hAHS_repB_283080_sRBC_ATGGA
+ NAME=sRNAseq_HsBam_PiwiKD_68hAHS_repB_283080_sRBC_ATGGA
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repB_283080_sRBC_ATGGA/
+ [[ Y == N ]]
++ awk '{ print $NF}'
++ grep length_filtered_long
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repB_283080_sRBC_ATGGA/log.txt
+ X='0
0'
+ Xlist='length_filtered_long 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0'
+ read LINE
++ cut -f 2
++ tr ' ' '\t'
++ echo /faststorage/project/PAN_illumina/tmp/sRBC_trimmed/283080_S8_R1_001_TGACT.fasta.gz sRNAseq_HsBam_ControlKD_68hAHS_repB_283080_sRBC_TGACT
+ NAME=sRNAseq_HsBam_ControlKD_68hAHS_repB_283080_sRBC_TGACT
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repB_283080_sRBC_TGACT/
+ [[ Y == N ]]
++ awk '{ print $NF}'
++ grep length_filtered_long
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repB_283080_sRBC_TGACT/log.txt
+ X='0
0'
+ Xlist='length_filtered_long 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0 0
0'
+ read LINE
+ tr ' ' '\t'
+ echo length_filtered_long 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
+ for CATEGORY in adaptor_dimer artifact_filtered length_filtered_short length_filtered_long N_filtered reads_after_filtering reads_not_mapped
+ SWITCH=N
+ read LINE
++ cut -f 2
++ tr ' ' '\t'
++ echo /faststorage/project/PAN_illumina/tmp/sRBC_trimmed/283079_S7_R1_001_CAGTG.fasta.gz sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG
+ NAME=sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG/
+ [[ N == N ]]
++ awk '{ print $NF}'
++ grep N_filtered
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG/log.txt
+ X='49717
49717'
+ Xlist='N_filtered 49717
49717'
+ SWITCH=Y
+ read LINE
++ cut -f 2
++ tr ' ' '\t'
++ echo /faststorage/project/PAN_illumina/tmp/sRBC_trimmed/283083_S11_R1_001_ATGGA.fasta.gz sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA
+ NAME=sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA/
+ [[ Y == N ]]
++ awk '{ print $NF}'
++ grep N_filtered
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA/log.txt
+ X='51374
51374'
+ Xlist='N_filtered 49717
49717 51374
51374'
+ read LINE
++ cut -f 2
++ tr ' ' '\t'
++ echo /faststorage/project/PAN_illumina/tmp/sRBC_trimmed/283079_S7_R1_001_GGTAT.fasta.gz sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT
+ NAME=sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT/
+ [[ Y == N ]]
++ awk '{ print $NF}'
++ grep N_filtered
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT/log.txt
+ X='22368
22368'
+ Xlist='N_filtered 49717
49717 51374
51374 22368
22368'
+ read LINE
++ cut -f 2
++ tr ' ' '\t'
++ echo /faststorage/project/PAN_illumina/tmp/sRBC_trimmed/283079_S7_R1_001_AGCAA.fasta.gz sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA
+ NAME=sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA/
+ [[ Y == N ]]
++ awk '{ print $NF}'
++ grep N_filtered
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA/log.txt
+ X='84626
84626'
+ Xlist='N_filtered 49717
49717 51374
51374 22368
22368 84626
84626'
+ read LINE
++ cut -f 2
++ tr ' ' '\t'
++ echo /faststorage/project/PAN_illumina/tmp/sRBC_trimmed/283081_S9_R1_001_GGTAT.fasta.gz sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT
+ NAME=sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT/
+ [[ Y == N ]]
++ awk '{ print $NF}'
++ grep N_filtered
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT/log.txt
+ X='31782
31782'
+ Xlist='N_filtered 49717
49717 51374
51374 22368
22368 84626
84626 31782
31782'
+ read LINE
++ cut -f 2
++ tr ' ' '\t'
++ echo /faststorage/project/PAN_illumina/tmp/sRBC_trimmed/283083_S11_R1_001_ACGAG.fasta.gz sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG
+ NAME=sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG/
+ [[ Y == N ]]
++ awk '{ print $NF}'
++ grep N_filtered
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG/log.txt
+ X='27045
27045'
+ Xlist='N_filtered 49717
49717 51374
51374 22368
22368 84626
84626 31782
31782 27045
27045'
+ read LINE
++ cut -f 2
++ tr ' ' '\t'
++ echo /faststorage/project/PAN_illumina/tmp/sRBC_trimmed/283081_S9_R1_001_AGCAA.fasta.gz sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA
+ NAME=sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA/
+ [[ Y == N ]]
++ awk '{ print $NF}'
++ grep N_filtered
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA/log.txt
+ X='76332
76332'
+ Xlist='N_filtered 49717
49717 51374
51374 22368
22368 84626
84626 31782
31782 27045
27045 76332
76332'
+ read LINE
++ cut -f 2
++ tr ' ' '\t'
++ echo /faststorage/project/PAN_illumina/tmp/sRBC_trimmed/283083_S11_R1_001_CTGAT.fasta.gz sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT
+ NAME=sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT/
+ [[ Y == N ]]
++ awk '{ print $NF}'
++ grep N_filtered
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT/log.txt
+ X='24729
24729'
+ Xlist='N_filtered 49717
49717 51374
51374 22368
22368 84626
84626 31782
31782 27045
27045 76332
76332 24729
24729'
+ read LINE
++ cut -f 2
++ tr ' ' '\t'
++ echo /faststorage/project/PAN_illumina/tmp/sRBC_trimmed/283082_S10_R1_001_GTCAG.fasta.gz sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG
+ NAME=sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG/
+ [[ Y == N ]]
++ awk '{ print $NF}'
++ grep N_filtered
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG/log.txt
+ X='41628
41628'
+ Xlist='N_filtered 49717
49717 51374
51374 22368
22368 84626
84626 31782
31782 27045
27045 76332
76332 24729
24729 41628
41628'
+ read LINE
++ cut -f 2
++ tr ' ' '\t'
++ echo /faststorage/project/PAN_illumina/tmp/sRBC_trimmed/283083_S11_R1_001_GAACG.fasta.gz sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG
+ NAME=sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG/
+ [[ Y == N ]]
++ awk '{ print $NF}'
++ grep N_filtered
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG/log.txt
+ X='86220
86220'
+ Xlist='N_filtered 49717
49717 51374
51374 22368
22368 84626
84626 31782
31782 27045
27045 76332
76332 24729
24729 41628
41628 86220
86220'
+ read LINE
++ cut -f 2
++ tr ' ' '\t'
++ echo /faststorage/project/PAN_illumina/tmp/sRBC_trimmed/283081_S9_R1_001_TACCA.fasta.gz sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA
+ NAME=sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA/
+ [[ Y == N ]]
++ awk '{ print $NF}'
++ grep N_filtered
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA/log.txt
+ X='26620
26620'
+ Xlist='N_filtered 49717
49717 51374
51374 22368
22368 84626
84626 31782
31782 27045
27045 76332
76332 24729
24729 41628
41628 86220
86220 26620
26620'
+ read LINE
++ cut -f 2
++ tr ' ' '\t'
++ echo /faststorage/project/PAN_illumina/tmp/sRBC_trimmed/283082_S10_R1_001_ATGGA.fasta.gz sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA
+ NAME=sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA/
+ [[ Y == N ]]
++ awk '{ print $NF}'
++ grep N_filtered
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA/log.txt
+ X='16635
16635'
+ Xlist='N_filtered 49717
49717 51374
51374 22368
22368 84626
84626 31782
31782 27045
27045 76332
76332 24729
24729 41628
41628 86220
86220 26620
26620 16635
16635'
+ read LINE
++ cut -f 2
++ tr ' ' '\t'
++ echo /faststorage/project/PAN_illumina/tmp/sRBC_trimmed/283082_S10_R1_001_CGTTC.fasta.gz sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC
+ NAME=sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC/
+ [[ Y == N ]]
++ awk '{ print $NF}'
++ grep N_filtered
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC/log.txt
+ X='14950
14950'
+ Xlist='N_filtered 49717
49717 51374
51374 22368
22368 84626
84626 31782
31782 27045
27045 76332
76332 24729
24729 41628
41628 86220
86220 26620
26620 16635
16635 14950
14950'
+ read LINE
++ cut -f 2
++ tr ' ' '\t'
++ echo /faststorage/project/PAN_illumina/tmp/sRBC_trimmed/283079_S7_R1_001_TACCA.fasta.gz sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA
+ NAME=sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA/
+ [[ Y == N ]]
++ awk '{ print $NF}'
++ grep N_filtered
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA/log.txt
+ X='14857
14857'
+ Xlist='N_filtered 49717
49717 51374
51374 22368
22368 84626
84626 31782
31782 27045
27045 76332
76332 24729
24729 41628
41628 86220
86220 26620
26620 16635
16635 14950
14950 14857
14857'
+ read LINE
++ cut -f 2
++ tr ' ' '\t'
++ echo /faststorage/project/PAN_illumina/tmp/sRBC_trimmed/283080_S8_R1_001_CGTTC.fasta.gz sRNAseq_HsBam_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC
+ NAME=sRNAseq_HsBam_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC/
+ [[ Y == N ]]
++ awk '{ print $NF}'
++ grep N_filtered
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC/log.txt
+ X='11111
11111'
+ Xlist='N_filtered 49717
49717 51374
51374 22368
22368 84626
84626 31782
31782 27045
27045 76332
76332 24729
24729 41628
41628 86220
86220 26620
26620 16635
16635 14950
14950 14857
14857 11111
11111'
+ read LINE
++ cut -f 2
++ tr ' ' '\t'
++ echo /faststorage/project/PAN_illumina/tmp/sRBC_trimmed/283080_S8_R1_001_GTCAG.fasta.gz sRNAseq_HsBam_ControlKD_00hAHS_repB_283080_sRBC_GTCAG
+ NAME=sRNAseq_HsBam_ControlKD_00hAHS_repB_283080_sRBC_GTCAG
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repB_283080_sRBC_GTCAG/
+ [[ Y == N ]]
++ awk '{ print $NF}'
++ grep N_filtered
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repB_283080_sRBC_GTCAG/log.txt
+ X='40983
40983'
+ Xlist='N_filtered 49717
49717 51374
51374 22368
22368 84626
84626 31782
31782 27045
27045 76332
76332 24729
24729 41628
41628 86220
86220 26620
26620 16635
16635 14950
14950 14857
14857 11111
11111 40983
40983'
+ read LINE
++ cut -f 2
++ tr ' ' '\t'
++ echo /faststorage/project/PAN_illumina/tmp/sRBC_trimmed/283081_S9_R1_001_CAGTG.fasta.gz sRNAseq_HsBam_ControlKD_00hAHS_repC_283081_sRBC_CAGTG
+ NAME=sRNAseq_HsBam_ControlKD_00hAHS_repC_283081_sRBC_CAGTG
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repC_283081_sRBC_CAGTG/
+ [[ Y == N ]]
++ awk '{ print $NF}'
++ grep N_filtered
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repC_283081_sRBC_CAGTG/log.txt
+ X='76755
76755'
+ Xlist='N_filtered 49717
49717 51374
51374 22368
22368 84626
84626 31782
31782 27045
27045 76332
76332 24729
24729 41628
41628 86220
86220 26620
26620 16635
16635 14950
14950 14857
14857 11111
11111 40983
40983 76755
76755'
+ read LINE
++ cut -f 2
++ tr ' ' '\t'
++ echo /faststorage/project/PAN_illumina/tmp/sRBC_trimmed/283082_S10_R1_001_TGACT.fasta.gz sRNAseq_HsBam_ControlKD_68hAHS_repD_283082_sRBC_TGACT
+ NAME=sRNAseq_HsBam_ControlKD_68hAHS_repD_283082_sRBC_TGACT
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repD_283082_sRBC_TGACT/
+ [[ Y == N ]]
++ awk '{ print $NF}'
++ grep N_filtered
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repD_283082_sRBC_TGACT/log.txt
+ X='95431
95431'
+ Xlist='N_filtered 49717
49717 51374
51374 22368
22368 84626
84626 31782
31782 27045
27045 76332
76332 24729
24729 41628
41628 86220
86220 26620
26620 16635
16635 14950
14950 14857
14857 11111
11111 40983
40983 76755
76755 95431
95431'
+ read LINE
++ cut -f 2
++ tr ' ' '\t'
++ echo /faststorage/project/PAN_illumina/tmp/sRBC_trimmed/283080_S8_R1_001_ATGGA.fasta.gz sRNAseq_HsBam_PiwiKD_68hAHS_repB_283080_sRBC_ATGGA
+ NAME=sRNAseq_HsBam_PiwiKD_68hAHS_repB_283080_sRBC_ATGGA
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repB_283080_sRBC_ATGGA/
+ [[ Y == N ]]
++ awk '{ print $NF}'
++ grep N_filtered
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repB_283080_sRBC_ATGGA/log.txt
+ X='8689
8689'
+ Xlist='N_filtered 49717
49717 51374
51374 22368
22368 84626
84626 31782
31782 27045
27045 76332
76332 24729
24729 41628
41628 86220
86220 26620
26620 16635
16635 14950
14950 14857
14857 11111
11111 40983
40983 76755
76755 95431
95431 8689
8689'
+ read LINE
++ cut -f 2
++ tr ' ' '\t'
++ echo /faststorage/project/PAN_illumina/tmp/sRBC_trimmed/283080_S8_R1_001_TGACT.fasta.gz sRNAseq_HsBam_ControlKD_68hAHS_repB_283080_sRBC_TGACT
+ NAME=sRNAseq_HsBam_ControlKD_68hAHS_repB_283080_sRBC_TGACT
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repB_283080_sRBC_TGACT/
+ [[ Y == N ]]
++ awk '{ print $NF}'
++ grep N_filtered
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repB_283080_sRBC_TGACT/log.txt
+ X='111000
111000'
+ Xlist='N_filtered 49717
49717 51374
51374 22368
22368 84626
84626 31782
31782 27045
27045 76332
76332 24729
24729 41628
41628 86220
86220 26620
26620 16635
16635 14950
14950 14857
14857 11111
11111 40983
40983 76755
76755 95431
95431 8689
8689 111000
111000'
+ read LINE
+ tr ' ' '\t'
+ echo N_filtered 49717 49717 51374 51374 22368 22368 84626 84626 31782 31782 27045 27045 76332 76332 24729 24729 41628 41628 86220 86220 26620 26620 16635 16635 14950 14950 14857 14857 11111 11111 40983 40983 76755 76755 95431 95431 8689 8689 111000 111000
+ for CATEGORY in adaptor_dimer artifact_filtered length_filtered_short length_filtered_long N_filtered reads_after_filtering reads_not_mapped
+ SWITCH=N
+ read LINE
++ cut -f 2
++ tr ' ' '\t'
++ echo /faststorage/project/PAN_illumina/tmp/sRBC_trimmed/283079_S7_R1_001_CAGTG.fasta.gz sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG
+ NAME=sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG/
+ [[ N == N ]]
++ awk '{ print $NF}'
++ grep reads_after_filtering
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG/log.txt
+ X='20462604
20462604'
+ Xlist='reads_after_filtering 20462604
20462604'
+ SWITCH=Y
+ read LINE
++ cut -f 2
++ tr ' ' '\t'
++ echo /faststorage/project/PAN_illumina/tmp/sRBC_trimmed/283083_S11_R1_001_ATGGA.fasta.gz sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA
+ NAME=sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA/
+ [[ Y == N ]]
++ awk '{ print $NF}'
++ grep reads_after_filtering
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA/log.txt
+ X='20817567
20817567'
+ Xlist='reads_after_filtering 20462604
20462604 20817567
20817567'
+ read LINE
++ cut -f 2
++ tr ' ' '\t'
++ echo /faststorage/project/PAN_illumina/tmp/sRBC_trimmed/283079_S7_R1_001_GGTAT.fasta.gz sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT
+ NAME=sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT/
+ [[ Y == N ]]
++ awk '{ print $NF}'
++ grep reads_after_filtering
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT/log.txt
+ X='9088411
9088411'
+ Xlist='reads_after_filtering 20462604
20462604 20817567
20817567 9088411
9088411'
+ read LINE
++ cut -f 2
++ tr ' ' '\t'
++ echo /faststorage/project/PAN_illumina/tmp/sRBC_trimmed/283079_S7_R1_001_AGCAA.fasta.gz sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA
+ NAME=sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA/
+ [[ Y == N ]]
++ awk '{ print $NF}'
++ grep reads_after_filtering
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA/log.txt
+ X='34560004
34560004'
+ Xlist='reads_after_filtering 20462604
20462604 20817567
20817567 9088411
9088411 34560004
34560004'
+ read LINE
++ cut -f 2
++ tr ' ' '\t'
++ echo /faststorage/project/PAN_illumina/tmp/sRBC_trimmed/283081_S9_R1_001_GGTAT.fasta.gz sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT
+ NAME=sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT/
+ [[ Y == N ]]
++ awk '{ print $NF}'
++ grep reads_after_filtering
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT/log.txt
+ X='12939834
12939834'
+ Xlist='reads_after_filtering 20462604
20462604 20817567
20817567 9088411
9088411 34560004
34560004 12939834
12939834'
+ read LINE
++ cut -f 2
++ tr ' ' '\t'
++ echo /faststorage/project/PAN_illumina/tmp/sRBC_trimmed/283083_S11_R1_001_ACGAG.fasta.gz sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG
+ NAME=sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG/
+ [[ Y == N ]]
++ awk '{ print $NF}'
++ grep reads_after_filtering
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG/log.txt
+ X='10965212
10965212'
+ Xlist='reads_after_filtering 20462604
20462604 20817567
20817567 9088411
9088411 34560004
34560004 12939834
12939834 10965212
10965212'
+ read LINE
++ cut -f 2
++ tr ' ' '\t'
++ echo /faststorage/project/PAN_illumina/tmp/sRBC_trimmed/283081_S9_R1_001_AGCAA.fasta.gz sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA
+ NAME=sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA/
+ [[ Y == N ]]
++ awk '{ print $NF}'
++ grep reads_after_filtering
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA/log.txt
+ X='31095445
31095445'
+ Xlist='reads_after_filtering 20462604
20462604 20817567
20817567 9088411
9088411 34560004
34560004 12939834
12939834 10965212
10965212 31095445
31095445'
+ read LINE
++ cut -f 2
++ tr ' ' '\t'
++ echo /faststorage/project/PAN_illumina/tmp/sRBC_trimmed/283083_S11_R1_001_CTGAT.fasta.gz sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT
+ NAME=sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT/
+ [[ Y == N ]]
++ awk '{ print $NF}'
++ grep reads_after_filtering
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT/log.txt
+ X='10011667
10011667'
+ Xlist='reads_after_filtering 20462604
20462604 20817567
20817567 9088411
9088411 34560004
34560004 12939834
12939834 10965212
10965212 31095445
31095445 10011667
10011667'
+ read LINE
++ cut -f 2
++ tr ' ' '\t'
++ echo /faststorage/project/PAN_illumina/tmp/sRBC_trimmed/283082_S10_R1_001_GTCAG.fasta.gz sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG
+ NAME=sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG/
+ [[ Y == N ]]
++ awk '{ print $NF}'
++ grep reads_after_filtering
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG/log.txt
+ X='17814613
17814613'
+ Xlist='reads_after_filtering 20462604
20462604 20817567
20817567 9088411
9088411 34560004
34560004 12939834
12939834 10965212
10965212 31095445
31095445 10011667
10011667 17814613
17814613'
+ read LINE
++ cut -f 2
++ tr ' ' '\t'
++ echo /faststorage/project/PAN_illumina/tmp/sRBC_trimmed/283083_S11_R1_001_GAACG.fasta.gz sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG
+ NAME=sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG/
+ [[ Y == N ]]
++ awk '{ print $NF}'
++ grep reads_after_filtering
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG/log.txt
+ X='34763176
34763176'
+ Xlist='reads_after_filtering 20462604
20462604 20817567
20817567 9088411
9088411 34560004
34560004 12939834
12939834 10965212
10965212 31095445
31095445 10011667
10011667 17814613
17814613 34763176
34763176'
+ read LINE
++ cut -f 2
++ tr ' ' '\t'
++ echo /faststorage/project/PAN_illumina/tmp/sRBC_trimmed/283081_S9_R1_001_TACCA.fasta.gz sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA
+ NAME=sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA/
+ [[ Y == N ]]
++ awk '{ print $NF}'
++ grep reads_after_filtering
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA/log.txt
+ X='10748766
10748766'
+ Xlist='reads_after_filtering 20462604
20462604 20817567
20817567 9088411
9088411 34560004
34560004 12939834
12939834 10965212
10965212 31095445
31095445 10011667
10011667 17814613
17814613 34763176
34763176 10748766
10748766'
+ read LINE
++ cut -f 2
++ tr ' ' '\t'
++ echo /faststorage/project/PAN_illumina/tmp/sRBC_trimmed/283082_S10_R1_001_ATGGA.fasta.gz sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA
+ NAME=sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA/
+ [[ Y == N ]]
++ awk '{ print $NF}'
++ grep reads_after_filtering
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA/log.txt
+ X='7075011
7075011'
+ Xlist='reads_after_filtering 20462604
20462604 20817567
20817567 9088411
9088411 34560004
34560004 12939834
12939834 10965212
10965212 31095445
31095445 10011667
10011667 17814613
17814613 34763176
34763176 10748766
10748766 7075011
7075011'
+ read LINE
++ cut -f 2
++ tr ' ' '\t'
++ echo /faststorage/project/PAN_illumina/tmp/sRBC_trimmed/283082_S10_R1_001_CGTTC.fasta.gz sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC
+ NAME=sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC/
+ [[ Y == N ]]
++ awk '{ print $NF}'
++ grep reads_after_filtering
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC/log.txt
+ X='6393615
6393615'
+ Xlist='reads_after_filtering 20462604
20462604 20817567
20817567 9088411
9088411 34560004
34560004 12939834
12939834 10965212
10965212 31095445
31095445 10011667
10011667 17814613
17814613 34763176
34763176 10748766
10748766 7075011
7075011 6393615
6393615'
+ read LINE
++ cut -f 2
++ tr ' ' '\t'
++ echo /faststorage/project/PAN_illumina/tmp/sRBC_trimmed/283079_S7_R1_001_TACCA.fasta.gz sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA
+ NAME=sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA/
+ [[ Y == N ]]
++ awk '{ print $NF}'
++ grep reads_after_filtering
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA/log.txt
+ X='5951202
5951202'
+ Xlist='reads_after_filtering 20462604
20462604 20817567
20817567 9088411
9088411 34560004
34560004 12939834
12939834 10965212
10965212 31095445
31095445 10011667
10011667 17814613
17814613 34763176
34763176 10748766
10748766 7075011
7075011 6393615
6393615 5951202
5951202'
+ read LINE
++ cut -f 2
++ tr ' ' '\t'
++ echo /faststorage/project/PAN_illumina/tmp/sRBC_trimmed/283080_S8_R1_001_CGTTC.fasta.gz sRNAseq_HsBam_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC
+ NAME=sRNAseq_HsBam_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC/
+ [[ Y == N ]]
++ awk '{ print $NF}'
++ grep reads_after_filtering
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC/log.txt
+ X='4471049
4471049'
+ Xlist='reads_after_filtering 20462604
20462604 20817567
20817567 9088411
9088411 34560004
34560004 12939834
12939834 10965212
10965212 31095445
31095445 10011667
10011667 17814613
17814613 34763176
34763176 10748766
10748766 7075011
7075011 6393615
6393615 5951202
5951202 4471049
4471049'
+ read LINE
++ cut -f 2
++ tr ' ' '\t'
++ echo /faststorage/project/PAN_illumina/tmp/sRBC_trimmed/283080_S8_R1_001_GTCAG.fasta.gz sRNAseq_HsBam_ControlKD_00hAHS_repB_283080_sRBC_GTCAG
+ NAME=sRNAseq_HsBam_ControlKD_00hAHS_repB_283080_sRBC_GTCAG
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repB_283080_sRBC_GTCAG/
+ [[ Y == N ]]
++ awk '{ print $NF}'
++ grep reads_after_filtering
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repB_283080_sRBC_GTCAG/log.txt
+ X='16928631
16928631'
+ Xlist='reads_after_filtering 20462604
20462604 20817567
20817567 9088411
9088411 34560004
34560004 12939834
12939834 10965212
10965212 31095445
31095445 10011667
10011667 17814613
17814613 34763176
34763176 10748766
10748766 7075011
7075011 6393615
6393615 5951202
5951202 4471049
4471049 16928631
16928631'
+ read LINE
++ cut -f 2
++ tr ' ' '\t'
++ echo /faststorage/project/PAN_illumina/tmp/sRBC_trimmed/283081_S9_R1_001_CAGTG.fasta.gz sRNAseq_HsBam_ControlKD_00hAHS_repC_283081_sRBC_CAGTG
+ NAME=sRNAseq_HsBam_ControlKD_00hAHS_repC_283081_sRBC_CAGTG
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repC_283081_sRBC_CAGTG/
+ [[ Y == N ]]
++ awk '{ print $NF}'
++ grep reads_after_filtering
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repC_283081_sRBC_CAGTG/log.txt
+ X='31442869
31442869'
+ Xlist='reads_after_filtering 20462604
20462604 20817567
20817567 9088411
9088411 34560004
34560004 12939834
12939834 10965212
10965212 31095445
31095445 10011667
10011667 17814613
17814613 34763176
34763176 10748766
10748766 7075011
7075011 6393615
6393615 5951202
5951202 4471049
4471049 16928631
16928631 31442869
31442869'
+ read LINE
++ cut -f 2
++ tr ' ' '\t'
++ echo /faststorage/project/PAN_illumina/tmp/sRBC_trimmed/283082_S10_R1_001_TGACT.fasta.gz sRNAseq_HsBam_ControlKD_68hAHS_repD_283082_sRBC_TGACT
+ NAME=sRNAseq_HsBam_ControlKD_68hAHS_repD_283082_sRBC_TGACT
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repD_283082_sRBC_TGACT/
+ [[ Y == N ]]
++ awk '{ print $NF}'
++ grep reads_after_filtering
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repD_283082_sRBC_TGACT/log.txt
+ X='40898342
40898342'
+ Xlist='reads_after_filtering 20462604
20462604 20817567
20817567 9088411
9088411 34560004
34560004 12939834
12939834 10965212
10965212 31095445
31095445 10011667
10011667 17814613
17814613 34763176
34763176 10748766
10748766 7075011
7075011 6393615
6393615 5951202
5951202 4471049
4471049 16928631
16928631 31442869
31442869 40898342
40898342'
+ read LINE
++ cut -f 2
++ tr ' ' '\t'
++ echo /faststorage/project/PAN_illumina/tmp/sRBC_trimmed/283080_S8_R1_001_ATGGA.fasta.gz sRNAseq_HsBam_PiwiKD_68hAHS_repB_283080_sRBC_ATGGA
+ NAME=sRNAseq_HsBam_PiwiKD_68hAHS_repB_283080_sRBC_ATGGA
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repB_283080_sRBC_ATGGA/
+ [[ Y == N ]]
++ awk '{ print $NF}'
++ grep reads_after_filtering
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repB_283080_sRBC_ATGGA/log.txt
+ X='3589221
3589221'
+ Xlist='reads_after_filtering 20462604
20462604 20817567
20817567 9088411
9088411 34560004
34560004 12939834
12939834 10965212
10965212 31095445
31095445 10011667
10011667 17814613
17814613 34763176
34763176 10748766
10748766 7075011
7075011 6393615
6393615 5951202
5951202 4471049
4471049 16928631
16928631 31442869
31442869 40898342
40898342 3589221
3589221'
+ read LINE
++ cut -f 2
++ tr ' ' '\t'
++ echo /faststorage/project/PAN_illumina/tmp/sRBC_trimmed/283080_S8_R1_001_TGACT.fasta.gz sRNAseq_HsBam_ControlKD_68hAHS_repB_283080_sRBC_TGACT
+ NAME=sRNAseq_HsBam_ControlKD_68hAHS_repB_283080_sRBC_TGACT
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repB_283080_sRBC_TGACT/
+ [[ Y == N ]]
++ awk '{ print $NF}'
++ grep reads_after_filtering
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repB_283080_sRBC_TGACT/log.txt
+ X='45558390
45558390'
+ Xlist='reads_after_filtering 20462604
20462604 20817567
20817567 9088411
9088411 34560004
34560004 12939834
12939834 10965212
10965212 31095445
31095445 10011667
10011667 17814613
17814613 34763176
34763176 10748766
10748766 7075011
7075011 6393615
6393615 5951202
5951202 4471049
4471049 16928631
16928631 31442869
31442869 40898342
40898342 3589221
3589221 45558390
45558390'
+ read LINE
+ tr ' ' '\t'
+ echo reads_after_filtering 20462604 20462604 20817567 20817567 9088411 9088411 34560004 34560004 12939834 12939834 10965212 10965212 31095445 31095445 10011667 10011667 17814613 17814613 34763176 34763176 10748766 10748766 7075011 7075011 6393615 6393615 5951202 5951202 4471049 4471049 16928631 16928631 31442869 31442869 40898342 40898342 3589221 3589221 45558390 45558390
+ for CATEGORY in adaptor_dimer artifact_filtered length_filtered_short length_filtered_long N_filtered reads_after_filtering reads_not_mapped
+ SWITCH=N
+ read LINE
++ cut -f 2
++ tr ' ' '\t'
++ echo /faststorage/project/PAN_illumina/tmp/sRBC_trimmed/283079_S7_R1_001_CAGTG.fasta.gz sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG
+ NAME=sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG/
+ [[ N == N ]]
++ awk '{ print $NF}'
++ grep reads_not_mapped
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG/log.txt
+ X=%
+ Xlist='reads_not_mapped %'
+ SWITCH=Y
+ read LINE
++ cut -f 2
++ tr ' ' '\t'
++ echo /faststorage/project/PAN_illumina/tmp/sRBC_trimmed/283083_S11_R1_001_ATGGA.fasta.gz sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA
+ NAME=sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA/
+ [[ Y == N ]]
++ awk '{ print $NF}'
++ grep reads_not_mapped
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA/log.txt
+ X=%
+ Xlist='reads_not_mapped % %'
+ read LINE
++ cut -f 2
++ tr ' ' '\t'
++ echo /faststorage/project/PAN_illumina/tmp/sRBC_trimmed/283079_S7_R1_001_GGTAT.fasta.gz sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT
+ NAME=sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT/
+ [[ Y == N ]]
++ awk '{ print $NF}'
++ grep reads_not_mapped
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT/log.txt
+ X=%
+ Xlist='reads_not_mapped % % %'
+ read LINE
++ cut -f 2
++ tr ' ' '\t'
++ echo /faststorage/project/PAN_illumina/tmp/sRBC_trimmed/283079_S7_R1_001_AGCAA.fasta.gz sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA
+ NAME=sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA/
+ [[ Y == N ]]
++ awk '{ print $NF}'
++ grep reads_not_mapped
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA/log.txt
+ X=%
+ Xlist='reads_not_mapped % % % %'
+ read LINE
++ cut -f 2
++ tr ' ' '\t'
++ echo /faststorage/project/PAN_illumina/tmp/sRBC_trimmed/283081_S9_R1_001_GGTAT.fasta.gz sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT
+ NAME=sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT/
+ [[ Y == N ]]
++ awk '{ print $NF}'
++ grep reads_not_mapped
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT/log.txt
+ X=%
+ Xlist='reads_not_mapped % % % % %'
+ read LINE
++ cut -f 2
++ tr ' ' '\t'
++ echo /faststorage/project/PAN_illumina/tmp/sRBC_trimmed/283083_S11_R1_001_ACGAG.fasta.gz sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG
+ NAME=sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG/
+ [[ Y == N ]]
++ awk '{ print $NF}'
++ grep reads_not_mapped
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG/log.txt
+ X=%
+ Xlist='reads_not_mapped % % % % % %'
+ read LINE
++ cut -f 2
++ tr ' ' '\t'
++ echo /faststorage/project/PAN_illumina/tmp/sRBC_trimmed/283081_S9_R1_001_AGCAA.fasta.gz sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA
+ NAME=sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA/
+ [[ Y == N ]]
++ awk '{ print $NF}'
++ grep reads_not_mapped
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA/log.txt
+ X=%
+ Xlist='reads_not_mapped % % % % % % %'
+ read LINE
++ cut -f 2
++ tr ' ' '\t'
++ echo /faststorage/project/PAN_illumina/tmp/sRBC_trimmed/283083_S11_R1_001_CTGAT.fasta.gz sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT
+ NAME=sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT/
+ [[ Y == N ]]
++ awk '{ print $NF}'
++ grep reads_not_mapped
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT/log.txt
+ X=%
+ Xlist='reads_not_mapped % % % % % % % %'
+ read LINE
++ cut -f 2
++ tr ' ' '\t'
++ echo /faststorage/project/PAN_illumina/tmp/sRBC_trimmed/283082_S10_R1_001_GTCAG.fasta.gz sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG
+ NAME=sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG/
+ [[ Y == N ]]
++ awk '{ print $NF}'
++ grep reads_not_mapped
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG/log.txt
+ X=%
+ Xlist='reads_not_mapped % % % % % % % % %'
+ read LINE
++ cut -f 2
++ tr ' ' '\t'
++ echo /faststorage/project/PAN_illumina/tmp/sRBC_trimmed/283083_S11_R1_001_GAACG.fasta.gz sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG
+ NAME=sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG/
+ [[ Y == N ]]
++ awk '{ print $NF}'
++ grep reads_not_mapped
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG/log.txt
+ X=%
+ Xlist='reads_not_mapped % % % % % % % % % %'
+ read LINE
++ cut -f 2
++ tr ' ' '\t'
++ echo /faststorage/project/PAN_illumina/tmp/sRBC_trimmed/283081_S9_R1_001_TACCA.fasta.gz sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA
+ NAME=sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA/
+ [[ Y == N ]]
++ awk '{ print $NF}'
++ grep reads_not_mapped
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA/log.txt
+ X=%
+ Xlist='reads_not_mapped % % % % % % % % % % %'
+ read LINE
++ cut -f 2
++ tr ' ' '\t'
++ echo /faststorage/project/PAN_illumina/tmp/sRBC_trimmed/283082_S10_R1_001_ATGGA.fasta.gz sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA
+ NAME=sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA/
+ [[ Y == N ]]
++ awk '{ print $NF}'
++ grep reads_not_mapped
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA/log.txt
+ X=%
+ Xlist='reads_not_mapped % % % % % % % % % % % %'
+ read LINE
++ cut -f 2
++ tr ' ' '\t'
++ echo /faststorage/project/PAN_illumina/tmp/sRBC_trimmed/283082_S10_R1_001_CGTTC.fasta.gz sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC
+ NAME=sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC/
+ [[ Y == N ]]
++ awk '{ print $NF}'
++ grep reads_not_mapped
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC/log.txt
+ X=%
+ Xlist='reads_not_mapped % % % % % % % % % % % % %'
+ read LINE
++ cut -f 2
++ tr ' ' '\t'
++ echo /faststorage/project/PAN_illumina/tmp/sRBC_trimmed/283079_S7_R1_001_TACCA.fasta.gz sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA
+ NAME=sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA/
+ [[ Y == N ]]
++ awk '{ print $NF}'
++ grep reads_not_mapped
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA/log.txt
+ X=%
+ Xlist='reads_not_mapped % % % % % % % % % % % % % %'
+ read LINE
++ cut -f 2
++ tr ' ' '\t'
++ echo /faststorage/project/PAN_illumina/tmp/sRBC_trimmed/283080_S8_R1_001_CGTTC.fasta.gz sRNAseq_HsBam_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC
+ NAME=sRNAseq_HsBam_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC/
+ [[ Y == N ]]
++ awk '{ print $NF}'
++ grep reads_not_mapped
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC/log.txt
+ X=%
+ Xlist='reads_not_mapped % % % % % % % % % % % % % % %'
+ read LINE
++ cut -f 2
++ tr ' ' '\t'
++ echo /faststorage/project/PAN_illumina/tmp/sRBC_trimmed/283080_S8_R1_001_GTCAG.fasta.gz sRNAseq_HsBam_ControlKD_00hAHS_repB_283080_sRBC_GTCAG
+ NAME=sRNAseq_HsBam_ControlKD_00hAHS_repB_283080_sRBC_GTCAG
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repB_283080_sRBC_GTCAG/
+ [[ Y == N ]]
++ awk '{ print $NF}'
++ grep reads_not_mapped
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repB_283080_sRBC_GTCAG/log.txt
+ X=%
+ Xlist='reads_not_mapped % % % % % % % % % % % % % % % %'
+ read LINE
++ cut -f 2
++ tr ' ' '\t'
++ echo /faststorage/project/PAN_illumina/tmp/sRBC_trimmed/283081_S9_R1_001_CAGTG.fasta.gz sRNAseq_HsBam_ControlKD_00hAHS_repC_283081_sRBC_CAGTG
+ NAME=sRNAseq_HsBam_ControlKD_00hAHS_repC_283081_sRBC_CAGTG
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repC_283081_sRBC_CAGTG/
+ [[ Y == N ]]
++ awk '{ print $NF}'
++ grep reads_not_mapped
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repC_283081_sRBC_CAGTG/log.txt
+ X=%
+ Xlist='reads_not_mapped % % % % % % % % % % % % % % % % %'
+ read LINE
++ cut -f 2
++ tr ' ' '\t'
++ echo /faststorage/project/PAN_illumina/tmp/sRBC_trimmed/283082_S10_R1_001_TGACT.fasta.gz sRNAseq_HsBam_ControlKD_68hAHS_repD_283082_sRBC_TGACT
+ NAME=sRNAseq_HsBam_ControlKD_68hAHS_repD_283082_sRBC_TGACT
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repD_283082_sRBC_TGACT/
+ [[ Y == N ]]
++ awk '{ print $NF}'
++ grep reads_not_mapped
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repD_283082_sRBC_TGACT/log.txt
+ X=%
+ Xlist='reads_not_mapped % % % % % % % % % % % % % % % % % %'
+ read LINE
++ cut -f 2
++ tr ' ' '\t'
++ echo /faststorage/project/PAN_illumina/tmp/sRBC_trimmed/283080_S8_R1_001_ATGGA.fasta.gz sRNAseq_HsBam_PiwiKD_68hAHS_repB_283080_sRBC_ATGGA
+ NAME=sRNAseq_HsBam_PiwiKD_68hAHS_repB_283080_sRBC_ATGGA
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repB_283080_sRBC_ATGGA/
+ [[ Y == N ]]
++ awk '{ print $NF}'
++ grep reads_not_mapped
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repB_283080_sRBC_ATGGA/log.txt
+ X=%
+ Xlist='reads_not_mapped % % % % % % % % % % % % % % % % % % %'
+ read LINE
++ cut -f 2
++ tr ' ' '\t'
++ echo /faststorage/project/PAN_illumina/tmp/sRBC_trimmed/283080_S8_R1_001_TGACT.fasta.gz sRNAseq_HsBam_ControlKD_68hAHS_repB_283080_sRBC_TGACT
+ NAME=sRNAseq_HsBam_ControlKD_68hAHS_repB_283080_sRBC_TGACT
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repB_283080_sRBC_TGACT/
+ [[ Y == N ]]
++ awk '{ print $NF}'
++ grep reads_not_mapped
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repB_283080_sRBC_TGACT/log.txt
+ X=%
+ Xlist='reads_not_mapped % % % % % % % % % % % % % % % % % % % %'
+ read LINE
+ tr ' ' '\t'
+ echo reads_not_mapped % % % % % % % % % % % % % % % % % % % %
+ for CATEGORY in annotation_counts splitup_mRNA splitup_TE
+ NAMES=
+ [[ annotation_counts != annotation_counts ]]
+ cut -f 2-
+ sort -k1,1n
+ awk -v 'OFS=\t' '{
    X[$1]=X[$1]"\t"$2
    Y[$1]+=NR
  }
  END {
    for (i in X) {
      print Y[i],i,X[i]
    }
  }' /dev/fd/63
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG/
++ NAMES=' sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG/sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG_annotation_counts.txt
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA/
++ NAMES=' sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA/sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA_annotation_counts.txt
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT/
++ NAMES=' sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT/sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT_annotation_counts.txt
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA/
++ NAMES=' sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA/sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA_annotation_counts.txt
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT/
++ NAMES=' sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT/sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT_annotation_counts.txt
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG/
++ NAMES=' sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG/sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG_annotation_counts.txt
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA/
++ NAMES=' sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA/sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA_annotation_counts.txt
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT/
++ NAMES=' sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT/sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT_annotation_counts.txt
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG/
++ NAMES=' sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG/sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG_annotation_counts.txt
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG/
++ NAMES=' sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG/sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG_annotation_counts.txt
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA/
++ NAMES=' sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA/sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA_annotation_counts.txt
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA/
++ NAMES=' sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA/sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA_annotation_counts.txt
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC/
++ NAMES=' sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC/sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC_annotation_counts.txt
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA/
++ NAMES=' sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA/sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA_annotation_counts.txt
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC/
++ NAMES=' sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA sRNAseq_HsBam_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC/sRNAseq_HsBam_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC_annotation_counts.txt
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repB_283080_sRBC_GTCAG/
++ NAMES=' sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA sRNAseq_HsBam_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC sRNAseq_HsBam_ControlKD_00hAHS_repB_283080_sRBC_GTCAG'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repB_283080_sRBC_GTCAG/sRNAseq_HsBam_ControlKD_00hAHS_repB_283080_sRBC_GTCAG_annotation_counts.txt
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repC_283081_sRBC_CAGTG/
++ NAMES=' sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA sRNAseq_HsBam_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC sRNAseq_HsBam_ControlKD_00hAHS_repB_283080_sRBC_GTCAG sRNAseq_HsBam_ControlKD_00hAHS_repC_283081_sRBC_CAGTG'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repC_283081_sRBC_CAGTG/sRNAseq_HsBam_ControlKD_00hAHS_repC_283081_sRBC_CAGTG_annotation_counts.txt
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repD_283082_sRBC_TGACT/
++ NAMES=' sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA sRNAseq_HsBam_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC sRNAseq_HsBam_ControlKD_00hAHS_repB_283080_sRBC_GTCAG sRNAseq_HsBam_ControlKD_00hAHS_repC_283081_sRBC_CAGTG sRNAseq_HsBam_ControlKD_68hAHS_repD_283082_sRBC_TGACT'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repD_283082_sRBC_TGACT/sRNAseq_HsBam_ControlKD_68hAHS_repD_283082_sRBC_TGACT_annotation_counts.txt
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repB_283080_sRBC_ATGGA/
++ NAMES=' sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA sRNAseq_HsBam_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC sRNAseq_HsBam_ControlKD_00hAHS_repB_283080_sRBC_GTCAG sRNAseq_HsBam_ControlKD_00hAHS_repC_283081_sRBC_CAGTG sRNAseq_HsBam_ControlKD_68hAHS_repD_283082_sRBC_TGACT sRNAseq_HsBam_PiwiKD_68hAHS_repB_283080_sRBC_ATGGA'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repB_283080_sRBC_ATGGA/sRNAseq_HsBam_PiwiKD_68hAHS_repB_283080_sRBC_ATGGA_annotation_counts.txt
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repB_283080_sRBC_TGACT/
++ NAMES=' sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA sRNAseq_HsBam_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC sRNAseq_HsBam_ControlKD_00hAHS_repB_283080_sRBC_GTCAG sRNAseq_HsBam_ControlKD_00hAHS_repC_283081_sRBC_CAGTG sRNAseq_HsBam_ControlKD_68hAHS_repD_283082_sRBC_TGACT sRNAseq_HsBam_PiwiKD_68hAHS_repB_283080_sRBC_ATGGA sRNAseq_HsBam_ControlKD_68hAHS_repB_283080_sRBC_TGACT'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repB_283080_sRBC_TGACT/sRNAseq_HsBam_ControlKD_68hAHS_repB_283080_sRBC_TGACT_annotation_counts.txt
++ read NAME
+ [[ annotation_counts != annotation_counts ]]
+ EXT=
+ tr -s '\t'
+ tr ' ' '\t'
+ cat /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt
+ [[ sRNAseq == CHIPseq ]]
+ [[ sRNAseq == DNAseq ]]
+ [[ '' == Y ]]
+ for CATEGORY in annotation_counts splitup_mRNA splitup_TE
+ NAMES=
+ [[ splitup_mRNA != annotation_counts ]]
+ rm -rf /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/splitup_mRNA.txt
+ cut -f 2-
+ sort -k1,1n
+ awk -v 'OFS=\t' '{
    X[$1]=X[$1]"\t"$2
    Y[$1]+=NR
  }
  END {
    for (i in X) {
      print Y[i],i,X[i]
    }
  }' /dev/fd/63
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG/
++ NAMES=' sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG/sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG_splitup_mRNA.txt
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA/
++ NAMES=' sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA/sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA_splitup_mRNA.txt
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT/
++ NAMES=' sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT/sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT_splitup_mRNA.txt
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA/
++ NAMES=' sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA/sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA_splitup_mRNA.txt
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT/
++ NAMES=' sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT/sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT_splitup_mRNA.txt
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG/
++ NAMES=' sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG/sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG_splitup_mRNA.txt
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA/
++ NAMES=' sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA/sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA_splitup_mRNA.txt
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT/
++ NAMES=' sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT/sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT_splitup_mRNA.txt
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG/
++ NAMES=' sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG/sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG_splitup_mRNA.txt
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG/
++ NAMES=' sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG/sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG_splitup_mRNA.txt
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA/
++ NAMES=' sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA/sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA_splitup_mRNA.txt
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA/
++ NAMES=' sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA/sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA_splitup_mRNA.txt
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC/
++ NAMES=' sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC/sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC_splitup_mRNA.txt
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA/
++ NAMES=' sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA/sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA_splitup_mRNA.txt
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC/
++ NAMES=' sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA sRNAseq_HsBam_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC/sRNAseq_HsBam_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC_splitup_mRNA.txt
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repB_283080_sRBC_GTCAG/
++ NAMES=' sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA sRNAseq_HsBam_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC sRNAseq_HsBam_ControlKD_00hAHS_repB_283080_sRBC_GTCAG'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repB_283080_sRBC_GTCAG/sRNAseq_HsBam_ControlKD_00hAHS_repB_283080_sRBC_GTCAG_splitup_mRNA.txt
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repC_283081_sRBC_CAGTG/
++ NAMES=' sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA sRNAseq_HsBam_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC sRNAseq_HsBam_ControlKD_00hAHS_repB_283080_sRBC_GTCAG sRNAseq_HsBam_ControlKD_00hAHS_repC_283081_sRBC_CAGTG'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repC_283081_sRBC_CAGTG/sRNAseq_HsBam_ControlKD_00hAHS_repC_283081_sRBC_CAGTG_splitup_mRNA.txt
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repD_283082_sRBC_TGACT/
++ NAMES=' sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA sRNAseq_HsBam_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC sRNAseq_HsBam_ControlKD_00hAHS_repB_283080_sRBC_GTCAG sRNAseq_HsBam_ControlKD_00hAHS_repC_283081_sRBC_CAGTG sRNAseq_HsBam_ControlKD_68hAHS_repD_283082_sRBC_TGACT'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repD_283082_sRBC_TGACT/sRNAseq_HsBam_ControlKD_68hAHS_repD_283082_sRBC_TGACT_splitup_mRNA.txt
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repB_283080_sRBC_ATGGA/
++ NAMES=' sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA sRNAseq_HsBam_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC sRNAseq_HsBam_ControlKD_00hAHS_repB_283080_sRBC_GTCAG sRNAseq_HsBam_ControlKD_00hAHS_repC_283081_sRBC_CAGTG sRNAseq_HsBam_ControlKD_68hAHS_repD_283082_sRBC_TGACT sRNAseq_HsBam_PiwiKD_68hAHS_repB_283080_sRBC_ATGGA'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repB_283080_sRBC_ATGGA/sRNAseq_HsBam_PiwiKD_68hAHS_repB_283080_sRBC_ATGGA_splitup_mRNA.txt
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repB_283080_sRBC_TGACT/
++ NAMES=' sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA sRNAseq_HsBam_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC sRNAseq_HsBam_ControlKD_00hAHS_repB_283080_sRBC_GTCAG sRNAseq_HsBam_ControlKD_00hAHS_repC_283081_sRBC_CAGTG sRNAseq_HsBam_ControlKD_68hAHS_repD_283082_sRBC_TGACT sRNAseq_HsBam_PiwiKD_68hAHS_repB_283080_sRBC_ATGGA sRNAseq_HsBam_ControlKD_68hAHS_repB_283080_sRBC_TGACT'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repB_283080_sRBC_TGACT/sRNAseq_HsBam_ControlKD_68hAHS_repB_283080_sRBC_TGACT_splitup_mRNA.txt
++ read NAME
+ [[ splitup_mRNA != annotation_counts ]]
+ EXT=annotation_
+ tr -s '\t'
+ tr ' ' '\t'
+ cat /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt
+ [[ sRNAseq == CHIPseq ]]
+ [[ sRNAseq == DNAseq ]]
+ [[ '' == Y ]]
+ for CATEGORY in annotation_counts splitup_mRNA splitup_TE
+ NAMES=
+ [[ splitup_TE != annotation_counts ]]
+ rm -rf /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/annotation_splitup_TE.txt
+ cut -f 2-
+ sort -k1,1n
+ awk -v 'OFS=\t' '{
    X[$1]=X[$1]"\t"$2
    Y[$1]+=NR
  }
  END {
    for (i in X) {
      print Y[i],i,X[i]
    }
  }' /dev/fd/63
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG/
++ NAMES=' sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG/sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG_splitup_TE.txt
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA/
++ NAMES=' sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA/sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA_splitup_TE.txt
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT/
++ NAMES=' sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT/sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT_splitup_TE.txt
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA/
++ NAMES=' sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA/sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA_splitup_TE.txt
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT/
++ NAMES=' sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT/sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT_splitup_TE.txt
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG/
++ NAMES=' sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG/sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG_splitup_TE.txt
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA/
++ NAMES=' sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA/sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA_splitup_TE.txt
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT/
++ NAMES=' sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT/sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT_splitup_TE.txt
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG/
++ NAMES=' sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG/sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG_splitup_TE.txt
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG/
++ NAMES=' sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG/sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG_splitup_TE.txt
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA/
++ NAMES=' sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA/sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA_splitup_TE.txt
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA/
++ NAMES=' sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA/sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA_splitup_TE.txt
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC/
++ NAMES=' sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC/sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC_splitup_TE.txt
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA/
++ NAMES=' sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA/sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA_splitup_TE.txt
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC/
++ NAMES=' sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA sRNAseq_HsBam_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC/sRNAseq_HsBam_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC_splitup_TE.txt
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repB_283080_sRBC_GTCAG/
++ NAMES=' sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA sRNAseq_HsBam_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC sRNAseq_HsBam_ControlKD_00hAHS_repB_283080_sRBC_GTCAG'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repB_283080_sRBC_GTCAG/sRNAseq_HsBam_ControlKD_00hAHS_repB_283080_sRBC_GTCAG_splitup_TE.txt
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repC_283081_sRBC_CAGTG/
++ NAMES=' sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA sRNAseq_HsBam_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC sRNAseq_HsBam_ControlKD_00hAHS_repB_283080_sRBC_GTCAG sRNAseq_HsBam_ControlKD_00hAHS_repC_283081_sRBC_CAGTG'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repC_283081_sRBC_CAGTG/sRNAseq_HsBam_ControlKD_00hAHS_repC_283081_sRBC_CAGTG_splitup_TE.txt
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repD_283082_sRBC_TGACT/
++ NAMES=' sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA sRNAseq_HsBam_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC sRNAseq_HsBam_ControlKD_00hAHS_repB_283080_sRBC_GTCAG sRNAseq_HsBam_ControlKD_00hAHS_repC_283081_sRBC_CAGTG sRNAseq_HsBam_ControlKD_68hAHS_repD_283082_sRBC_TGACT'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repD_283082_sRBC_TGACT/sRNAseq_HsBam_ControlKD_68hAHS_repD_283082_sRBC_TGACT_splitup_TE.txt
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repB_283080_sRBC_ATGGA/
++ NAMES=' sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA sRNAseq_HsBam_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC sRNAseq_HsBam_ControlKD_00hAHS_repB_283080_sRBC_GTCAG sRNAseq_HsBam_ControlKD_00hAHS_repC_283081_sRBC_CAGTG sRNAseq_HsBam_ControlKD_68hAHS_repD_283082_sRBC_TGACT sRNAseq_HsBam_PiwiKD_68hAHS_repB_283080_sRBC_ATGGA'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repB_283080_sRBC_ATGGA/sRNAseq_HsBam_PiwiKD_68hAHS_repB_283080_sRBC_ATGGA_splitup_TE.txt
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repB_283080_sRBC_TGACT/
++ NAMES=' sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA sRNAseq_HsBam_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC sRNAseq_HsBam_ControlKD_00hAHS_repB_283080_sRBC_GTCAG sRNAseq_HsBam_ControlKD_00hAHS_repC_283081_sRBC_CAGTG sRNAseq_HsBam_ControlKD_68hAHS_repD_283082_sRBC_TGACT sRNAseq_HsBam_PiwiKD_68hAHS_repB_283080_sRBC_ATGGA sRNAseq_HsBam_ControlKD_68hAHS_repB_283080_sRBC_TGACT'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repB_283080_sRBC_TGACT/sRNAseq_HsBam_ControlKD_68hAHS_repB_283080_sRBC_TGACT_splitup_TE.txt
++ read NAME
+ [[ splitup_TE != annotation_counts ]]
+ EXT=annotation_
+ tr -s '\t'
+ tr ' ' '\t'
+ cat /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt
+ [[ sRNAseq == CHIPseq ]]
+ [[ sRNAseq == DNAseq ]]
+ [[ '' == Y ]]
+ Rscript /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/script-files/plot_annotations.R TMP=/faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/ OUTdir=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/plots/ FILE=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/annotation_counts.txt PLOTdir=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/plots/
+ singularity exec --cleanenv -B /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/:/tmp /home/thomasgrnbk/AP_singu/R.simg Rscript /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/script-files/plot_annotations.R TMP=/faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/ OUTdir=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/plots/ FILE=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/annotation_counts.txt PLOTdir=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/plots/

Attaching package: ‘plotly’

The following objects are masked from ‘package:plyr’:

    arrange, mutate, rename, summarise

The following object is masked from ‘package:ggplot2’:

    last_plot

The following object is masked from ‘package:stats’:

    filter

The following object is masked from ‘package:graphics’:

    layout

Error in read.table(FILE, header = TRUE) : more columns than column names
Execution halted
+ [[ N == Y ]]
+ [[ dm6 == dm6 ]]
+ mkdir /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/1kb_tiles
+ for STRAND in Plus Minus
+ cut -f 3-
+ sort -k1,1n
+ awk -v 'OFS=\t' '
    {
      if($2==-1){$2=0}

      X[$1]=X[$1]"\t"$2
      Y[$1]+=NR
    }
    END {
      for (i in X) {
        print Y[i],i,X[i]
      }
    }' /dev/fd/63
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG/
++ NAMES=' sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG/WindowCounts_Plus.txt
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA/
++ NAMES=' sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA/WindowCounts_Plus.txt
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT/
++ NAMES=' sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT/WindowCounts_Plus.txt
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA/
++ NAMES=' sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA/WindowCounts_Plus.txt
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT/
++ NAMES=' sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT/WindowCounts_Plus.txt
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG/
++ NAMES=' sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG/WindowCounts_Plus.txt
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA/
++ NAMES=' sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA/WindowCounts_Plus.txt
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT/
++ NAMES=' sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT/WindowCounts_Plus.txt
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG/
++ NAMES=' sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG/WindowCounts_Plus.txt
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG/
++ NAMES=' sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG/WindowCounts_Plus.txt
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA/
++ NAMES=' sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA/WindowCounts_Plus.txt
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA/
++ NAMES=' sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA/WindowCounts_Plus.txt
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC/
++ NAMES=' sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC/WindowCounts_Plus.txt
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA/
++ NAMES=' sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA/WindowCounts_Plus.txt
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC/
++ NAMES=' sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA sRNAseq_HsBam_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC/WindowCounts_Plus.txt
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repB_283080_sRBC_GTCAG/
++ NAMES=' sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA sRNAseq_HsBam_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC sRNAseq_HsBam_ControlKD_00hAHS_repB_283080_sRBC_GTCAG'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repB_283080_sRBC_GTCAG/WindowCounts_Plus.txt
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repC_283081_sRBC_CAGTG/
++ NAMES=' sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA sRNAseq_HsBam_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC sRNAseq_HsBam_ControlKD_00hAHS_repB_283080_sRBC_GTCAG sRNAseq_HsBam_ControlKD_00hAHS_repC_283081_sRBC_CAGTG'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repC_283081_sRBC_CAGTG/WindowCounts_Plus.txt
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repD_283082_sRBC_TGACT/
++ NAMES=' sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA sRNAseq_HsBam_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC sRNAseq_HsBam_ControlKD_00hAHS_repB_283080_sRBC_GTCAG sRNAseq_HsBam_ControlKD_00hAHS_repC_283081_sRBC_CAGTG sRNAseq_HsBam_ControlKD_68hAHS_repD_283082_sRBC_TGACT'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repD_283082_sRBC_TGACT/WindowCounts_Plus.txt
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repB_283080_sRBC_ATGGA/
++ NAMES=' sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA sRNAseq_HsBam_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC sRNAseq_HsBam_ControlKD_00hAHS_repB_283080_sRBC_GTCAG sRNAseq_HsBam_ControlKD_00hAHS_repC_283081_sRBC_CAGTG sRNAseq_HsBam_ControlKD_68hAHS_repD_283082_sRBC_TGACT sRNAseq_HsBam_PiwiKD_68hAHS_repB_283080_sRBC_ATGGA'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repB_283080_sRBC_ATGGA/WindowCounts_Plus.txt
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repB_283080_sRBC_TGACT/
++ NAMES=' sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA sRNAseq_HsBam_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC sRNAseq_HsBam_ControlKD_00hAHS_repB_283080_sRBC_GTCAG sRNAseq_HsBam_ControlKD_00hAHS_repC_283081_sRBC_CAGTG sRNAseq_HsBam_ControlKD_68hAHS_repD_283082_sRBC_TGACT sRNAseq_HsBam_PiwiKD_68hAHS_repB_283080_sRBC_ATGGA sRNAseq_HsBam_ControlKD_68hAHS_repB_283080_sRBC_TGACT'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repB_283080_sRBC_TGACT/WindowCounts_Plus.txt
++ read NAME
+ echo sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA sRNAseq_HsBam_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC sRNAseq_HsBam_ControlKD_00hAHS_repB_283080_sRBC_GTCAG sRNAseq_HsBam_ControlKD_00hAHS_repC_283081_sRBC_CAGTG sRNAseq_HsBam_ControlKD_68hAHS_repD_283082_sRBC_TGACT sRNAseq_HsBam_PiwiKD_68hAHS_repB_283080_sRBC_ATGGA sRNAseq_HsBam_ControlKD_68hAHS_repB_283080_sRBC_TGACT
+ tr ' ' '\t'
+ tr -s '\t'
+ cat /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt
+ tr -s '\t'
+ tr ' ' '\t'
+ for STRAND in Plus Minus
+ cut -f 3-
+ awk -v 'OFS=\t' '
    {
      if($2==-1){$2=0}

      X[$1]=X[$1]"\t"$2
      Y[$1]+=NR
    }
    END {
      for (i in X) {
        print Y[i],i,X[i]
      }
+ sort -k1,1n
    }' /dev/fd/63
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG/
++ NAMES=' sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG/WindowCounts_Minus.txt
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA/
++ NAMES=' sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA/WindowCounts_Minus.txt
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT/
++ NAMES=' sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT/WindowCounts_Minus.txt
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA/
++ NAMES=' sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA/WindowCounts_Minus.txt
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT/
++ NAMES=' sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT/WindowCounts_Minus.txt
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG/
++ NAMES=' sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG/WindowCounts_Minus.txt
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA/
++ NAMES=' sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA/WindowCounts_Minus.txt
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT/
++ NAMES=' sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT/WindowCounts_Minus.txt
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG/
++ NAMES=' sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG/WindowCounts_Minus.txt
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG/
++ NAMES=' sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG/WindowCounts_Minus.txt
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA/
++ NAMES=' sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA/WindowCounts_Minus.txt
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA/
++ NAMES=' sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA/WindowCounts_Minus.txt
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC/
++ NAMES=' sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC/WindowCounts_Minus.txt
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA/
++ NAMES=' sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA/WindowCounts_Minus.txt
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC/
++ NAMES=' sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA sRNAseq_HsBam_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC/WindowCounts_Minus.txt
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repB_283080_sRBC_GTCAG/
++ NAMES=' sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA sRNAseq_HsBam_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC sRNAseq_HsBam_ControlKD_00hAHS_repB_283080_sRBC_GTCAG'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repB_283080_sRBC_GTCAG/WindowCounts_Minus.txt
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repC_283081_sRBC_CAGTG/
++ NAMES=' sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA sRNAseq_HsBam_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC sRNAseq_HsBam_ControlKD_00hAHS_repB_283080_sRBC_GTCAG sRNAseq_HsBam_ControlKD_00hAHS_repC_283081_sRBC_CAGTG'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repC_283081_sRBC_CAGTG/WindowCounts_Minus.txt
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repD_283082_sRBC_TGACT/
++ NAMES=' sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA sRNAseq_HsBam_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC sRNAseq_HsBam_ControlKD_00hAHS_repB_283080_sRBC_GTCAG sRNAseq_HsBam_ControlKD_00hAHS_repC_283081_sRBC_CAGTG sRNAseq_HsBam_ControlKD_68hAHS_repD_283082_sRBC_TGACT'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repD_283082_sRBC_TGACT/WindowCounts_Minus.txt
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repB_283080_sRBC_ATGGA/
++ NAMES=' sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA sRNAseq_HsBam_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC sRNAseq_HsBam_ControlKD_00hAHS_repB_283080_sRBC_GTCAG sRNAseq_HsBam_ControlKD_00hAHS_repC_283081_sRBC_CAGTG sRNAseq_HsBam_ControlKD_68hAHS_repD_283082_sRBC_TGACT sRNAseq_HsBam_PiwiKD_68hAHS_repB_283080_sRBC_ATGGA'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repB_283080_sRBC_ATGGA/WindowCounts_Minus.txt
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repB_283080_sRBC_TGACT/
++ NAMES=' sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA sRNAseq_HsBam_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC sRNAseq_HsBam_ControlKD_00hAHS_repB_283080_sRBC_GTCAG sRNAseq_HsBam_ControlKD_00hAHS_repC_283081_sRBC_CAGTG sRNAseq_HsBam_ControlKD_68hAHS_repD_283082_sRBC_TGACT sRNAseq_HsBam_PiwiKD_68hAHS_repB_283080_sRBC_ATGGA sRNAseq_HsBam_ControlKD_68hAHS_repB_283080_sRBC_TGACT'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repB_283080_sRBC_TGACT/WindowCounts_Minus.txt
++ read NAME
+ echo sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA sRNAseq_HsBam_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC sRNAseq_HsBam_ControlKD_00hAHS_repB_283080_sRBC_GTCAG sRNAseq_HsBam_ControlKD_00hAHS_repC_283081_sRBC_CAGTG sRNAseq_HsBam_ControlKD_68hAHS_repD_283082_sRBC_TGACT sRNAseq_HsBam_PiwiKD_68hAHS_repB_283080_sRBC_ATGGA sRNAseq_HsBam_ControlKD_68hAHS_repB_283080_sRBC_TGACT
+ tr ' ' '\t'
+ tr -s '\t'
+ cat /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt
+ tr ' ' '\t'
+ tr -s '\t'
+ echo sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA sRNAseq_HsBam_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC sRNAseq_HsBam_ControlKD_00hAHS_repB_283080_sRBC_GTCAG sRNAseq_HsBam_ControlKD_00hAHS_repC_283081_sRBC_CAGTG sRNAseq_HsBam_ControlKD_68hAHS_repD_283082_sRBC_TGACT sRNAseq_HsBam_PiwiKD_68hAHS_repB_283080_sRBC_ATGGA sRNAseq_HsBam_ControlKD_68hAHS_repB_283080_sRBC_TGACT
+ tr ' ' '\t'
+ cp /faststorage/project/PAN_illumina/backup/scripts/AnnotationPipeline/utility-files//dmel/dm6/1kb_tile/kbWindows_mainchr_genes_tss_dm6.txt /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/1kb_tiles/
+ rawFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/plots/raw-data/
+ mkdir -p /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/plots/raw-data/
+ [[ sRNAseq == sRNAseq ]]
+ rm -rf '/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/plots/size-profiles/*'
+ mkdir /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/plots/size-profiles/
+ for CATEGORY in all filtered TE rRNA miRNA
+ SWITCH=N
+ read NAME
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG/size-profiles/
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG/normalization.txt
++ cut -f 1
++ tr ' ' '\t'
++ tail -n 1
+ NORM=0
+ [[ N == N ]]
+ awk -v 'OFS=\t' -v NORM=0 '{
          print $1,$2/NORM
        }' /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG/size-profiles/size-profile_sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG-all.txt
awk: cmd. line:2: (FILENAME=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG/size-profiles/size-profile_sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG-all.txt FNR=1) fatal: division by zero attempted
+ SWITCH=Y
+ read NAME
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA/size-profiles/
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA/normalization.txt
++ tail -n 1
++ cut -f 1
++ tr ' ' '\t'
+ NORM=0
+ [[ Y == N ]]
+ awk -v 'OFS=\t' -v NORM=0 '{
          print $1,$2/NORM
        }' /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA/size-profiles/size-profile_sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA-all.txt
awk: cmd. line:2: (FILENAME=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA/size-profiles/size-profile_sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA-all.txt FNR=1) fatal: division by zero attempted
+ join /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMPnorm.txt
+ mv /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP2.txt /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt
+ read NAME
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT/size-profiles/
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT/normalization.txt
++ cut -f 1
++ tr ' ' '\t'
++ tail -n 1
+ NORM=0
+ [[ Y == N ]]
+ awk -v 'OFS=\t' -v NORM=0 '{
          print $1,$2/NORM
        }' /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT/size-profiles/size-profile_sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT-all.txt
awk: cmd. line:2: (FILENAME=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT/size-profiles/size-profile_sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT-all.txt FNR=1) fatal: division by zero attempted
+ join /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMPnorm.txt
+ mv /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP2.txt /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt
+ read NAME
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA/size-profiles/
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA/normalization.txt
++ cut -f 1
++ tr ' ' '\t'
++ tail -n 1
+ NORM=0
+ [[ Y == N ]]
+ awk -v 'OFS=\t' -v NORM=0 '{
          print $1,$2/NORM
        }' /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA/size-profiles/size-profile_sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA-all.txt
awk: cmd. line:2: (FILENAME=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA/size-profiles/size-profile_sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA-all.txt FNR=1) fatal: division by zero attempted
+ join /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMPnorm.txt
+ mv /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP2.txt /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt
+ read NAME
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT/size-profiles/
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT/normalization.txt
++ cut -f 1
++ tail -n 1
++ tr ' ' '\t'
+ NORM=0
+ [[ Y == N ]]
+ awk -v 'OFS=\t' -v NORM=0 '{
          print $1,$2/NORM
        }' /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT/size-profiles/size-profile_sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT-all.txt
awk: cmd. line:2: (FILENAME=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT/size-profiles/size-profile_sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT-all.txt FNR=1) fatal: division by zero attempted
+ join /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMPnorm.txt
+ mv /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP2.txt /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt
+ read NAME
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG/size-profiles/
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG/normalization.txt
++ cut -f 1
++ tail -n 1
++ tr ' ' '\t'
+ NORM=0
+ [[ Y == N ]]
+ awk -v 'OFS=\t' -v NORM=0 '{
          print $1,$2/NORM
        }' /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG/size-profiles/size-profile_sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG-all.txt
awk: cmd. line:2: (FILENAME=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG/size-profiles/size-profile_sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG-all.txt FNR=1) fatal: division by zero attempted
+ join /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMPnorm.txt
+ mv /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP2.txt /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt
+ read NAME
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA/size-profiles/
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA/normalization.txt
++ cut -f 1
++ tr ' ' '\t'
++ tail -n 1
+ NORM=0
+ [[ Y == N ]]
+ awk -v 'OFS=\t' -v NORM=0 '{
          print $1,$2/NORM
        }' /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA/size-profiles/size-profile_sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA-all.txt
awk: cmd. line:2: (FILENAME=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA/size-profiles/size-profile_sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA-all.txt FNR=1) fatal: division by zero attempted
+ join /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMPnorm.txt
+ mv /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP2.txt /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt
+ read NAME
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT/size-profiles/
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT/normalization.txt
++ cut -f 1
++ tr ' ' '\t'
++ tail -n 1
+ NORM=0
+ [[ Y == N ]]
+ awk -v 'OFS=\t' -v NORM=0 '{
          print $1,$2/NORM
        }' /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT/size-profiles/size-profile_sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT-all.txt
awk: cmd. line:2: (FILENAME=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT/size-profiles/size-profile_sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT-all.txt FNR=1) fatal: division by zero attempted
+ join /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMPnorm.txt
+ mv /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP2.txt /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt
+ read NAME
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG/size-profiles/
++ cut -f 1
++ tr ' ' '\t'
++ tail -n 1
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG/normalization.txt
+ NORM=0
+ [[ Y == N ]]
+ awk -v 'OFS=\t' -v NORM=0 '{
          print $1,$2/NORM
        }' /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG/size-profiles/size-profile_sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG-all.txt
awk: cmd. line:2: (FILENAME=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG/size-profiles/size-profile_sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG-all.txt FNR=1) fatal: division by zero attempted
+ join /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMPnorm.txt
+ mv /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP2.txt /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt
+ read NAME
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG/size-profiles/
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG/normalization.txt
++ cut -f 1
++ tr ' ' '\t'
++ tail -n 1
+ NORM=0
+ [[ Y == N ]]
+ awk -v 'OFS=\t' -v NORM=0 '{
          print $1,$2/NORM
        }' /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG/size-profiles/size-profile_sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG-all.txt
awk: cmd. line:2: (FILENAME=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG/size-profiles/size-profile_sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG-all.txt FNR=1) fatal: division by zero attempted
+ join /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMPnorm.txt
+ mv /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP2.txt /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt
+ read NAME
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA/size-profiles/
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA/normalization.txt
++ cut -f 1
++ tail -n 1
++ tr ' ' '\t'
+ NORM=0
+ [[ Y == N ]]
+ awk -v 'OFS=\t' -v NORM=0 '{
          print $1,$2/NORM
        }' /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA/size-profiles/size-profile_sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA-all.txt
awk: cmd. line:2: (FILENAME=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA/size-profiles/size-profile_sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA-all.txt FNR=1) fatal: division by zero attempted
+ join /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMPnorm.txt
+ mv /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP2.txt /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt
+ read NAME
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA/size-profiles/
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA/normalization.txt
++ tail -n 1
++ tr ' ' '\t'
++ cut -f 1
+ NORM=0
+ [[ Y == N ]]
+ awk -v 'OFS=\t' -v NORM=0 '{
          print $1,$2/NORM
        }' /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA/size-profiles/size-profile_sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA-all.txt
awk: cmd. line:2: (FILENAME=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA/size-profiles/size-profile_sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA-all.txt FNR=1) fatal: division by zero attempted
+ join /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMPnorm.txt
+ mv /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP2.txt /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt
+ read NAME
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC/size-profiles/
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC/normalization.txt
++ cut -f 1
++ tail -n 1
++ tr ' ' '\t'
+ NORM=0
+ [[ Y == N ]]
+ awk -v 'OFS=\t' -v NORM=0 '{
          print $1,$2/NORM
        }' /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC/size-profiles/size-profile_sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC-all.txt
awk: cmd. line:2: (FILENAME=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC/size-profiles/size-profile_sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC-all.txt FNR=1) fatal: division by zero attempted
+ join /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMPnorm.txt
+ mv /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP2.txt /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt
+ read NAME
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA/size-profiles/
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA/normalization.txt
++ cut -f 1
++ tr ' ' '\t'
++ tail -n 1
+ NORM=0
+ [[ Y == N ]]
+ awk -v 'OFS=\t' -v NORM=0 '{
          print $1,$2/NORM
        }' /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA/size-profiles/size-profile_sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA-all.txt
awk: cmd. line:2: (FILENAME=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA/size-profiles/size-profile_sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA-all.txt FNR=1) fatal: division by zero attempted
+ join /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMPnorm.txt
+ mv /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP2.txt /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt
+ read NAME
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC/size-profiles/
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC/normalization.txt
++ tr ' ' '\t'
++ cut -f 1
++ tail -n 1
+ NORM=0
+ [[ Y == N ]]
+ awk -v 'OFS=\t' -v NORM=0 '{
          print $1,$2/NORM
        }' /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC/size-profiles/size-profile_sRNAseq_HsBam_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC-all.txt
awk: cmd. line:2: (FILENAME=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC/size-profiles/size-profile_sRNAseq_HsBam_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC-all.txt FNR=1) fatal: division by zero attempted
+ join /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMPnorm.txt
+ mv /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP2.txt /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt
+ read NAME
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repB_283080_sRBC_GTCAG/size-profiles/
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repB_283080_sRBC_GTCAG/normalization.txt
++ cut -f 1
++ tr ' ' '\t'
++ tail -n 1
+ NORM=0
+ [[ Y == N ]]
+ awk -v 'OFS=\t' -v NORM=0 '{
          print $1,$2/NORM
        }' /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repB_283080_sRBC_GTCAG/size-profiles/size-profile_sRNAseq_HsBam_ControlKD_00hAHS_repB_283080_sRBC_GTCAG-all.txt
awk: cmd. line:2: (FILENAME=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repB_283080_sRBC_GTCAG/size-profiles/size-profile_sRNAseq_HsBam_ControlKD_00hAHS_repB_283080_sRBC_GTCAG-all.txt FNR=1) fatal: division by zero attempted
+ join /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMPnorm.txt
+ mv /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP2.txt /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt
+ read NAME
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repC_283081_sRBC_CAGTG/size-profiles/
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repC_283081_sRBC_CAGTG/normalization.txt
++ cut -f 1
++ tr ' ' '\t'
++ tail -n 1
+ NORM=0
+ [[ Y == N ]]
+ awk -v 'OFS=\t' -v NORM=0 '{
          print $1,$2/NORM
        }' /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repC_283081_sRBC_CAGTG/size-profiles/size-profile_sRNAseq_HsBam_ControlKD_00hAHS_repC_283081_sRBC_CAGTG-all.txt
awk: cmd. line:2: (FILENAME=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repC_283081_sRBC_CAGTG/size-profiles/size-profile_sRNAseq_HsBam_ControlKD_00hAHS_repC_283081_sRBC_CAGTG-all.txt FNR=1) fatal: division by zero attempted
+ join /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMPnorm.txt
+ mv /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP2.txt /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt
+ read NAME
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repD_283082_sRBC_TGACT/size-profiles/
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repD_283082_sRBC_TGACT/normalization.txt
++ cut -f 1
++ tr ' ' '\t'
++ tail -n 1
+ NORM=0
+ [[ Y == N ]]
+ awk -v 'OFS=\t' -v NORM=0 '{
          print $1,$2/NORM
        }' /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repD_283082_sRBC_TGACT/size-profiles/size-profile_sRNAseq_HsBam_ControlKD_68hAHS_repD_283082_sRBC_TGACT-all.txt
awk: cmd. line:2: (FILENAME=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repD_283082_sRBC_TGACT/size-profiles/size-profile_sRNAseq_HsBam_ControlKD_68hAHS_repD_283082_sRBC_TGACT-all.txt FNR=1) fatal: division by zero attempted
+ join /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMPnorm.txt
+ mv /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP2.txt /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt
+ read NAME
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repB_283080_sRBC_ATGGA/size-profiles/
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repB_283080_sRBC_ATGGA/normalization.txt
++ tail -n 1
++ cut -f 1
++ tr ' ' '\t'
+ NORM=0
+ [[ Y == N ]]
+ awk -v 'OFS=\t' -v NORM=0 '{
          print $1,$2/NORM
        }' /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repB_283080_sRBC_ATGGA/size-profiles/size-profile_sRNAseq_HsBam_PiwiKD_68hAHS_repB_283080_sRBC_ATGGA-all.txt
awk: cmd. line:2: (FILENAME=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repB_283080_sRBC_ATGGA/size-profiles/size-profile_sRNAseq_HsBam_PiwiKD_68hAHS_repB_283080_sRBC_ATGGA-all.txt FNR=1) fatal: division by zero attempted
+ join /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMPnorm.txt
+ mv /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP2.txt /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt
+ read NAME
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repB_283080_sRBC_TGACT/size-profiles/
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repB_283080_sRBC_TGACT/normalization.txt
++ cut -f 1
++ tr ' ' '\t'
++ tail -n 1
+ NORM=0
+ [[ Y == N ]]
+ awk -v 'OFS=\t' -v NORM=0 '{
          print $1,$2/NORM
        }' /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repB_283080_sRBC_TGACT/size-profiles/size-profile_sRNAseq_HsBam_ControlKD_68hAHS_repB_283080_sRBC_TGACT-all.txt
awk: cmd. line:2: (FILENAME=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repB_283080_sRBC_TGACT/size-profiles/size-profile_sRNAseq_HsBam_ControlKD_68hAHS_repB_283080_sRBC_TGACT-all.txt FNR=1) fatal: division by zero attempted
+ join /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMPnorm.txt
+ mv /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP2.txt /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt
+ read NAME
+ echo length sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA sRNAseq_HsBam_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC sRNAseq_HsBam_ControlKD_00hAHS_repB_283080_sRBC_GTCAG sRNAseq_HsBam_ControlKD_00hAHS_repC_283081_sRBC_CAGTG sRNAseq_HsBam_ControlKD_68hAHS_repD_283082_sRBC_TGACT sRNAseq_HsBam_PiwiKD_68hAHS_repB_283080_sRBC_ATGGA sRNAseq_HsBam_ControlKD_68hAHS_repB_283080_sRBC_TGACT
+ tr ' ' '\t'
+ sort -k1,1n /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt
+ tr ' ' '\t'
+ Rscript /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/script-files/plot_compound-size-profile.R TMP=/faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/ CATEGORY=all FOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/plots/raw-data/ PLOTdir=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/plots/size-profiles/
+ singularity exec --cleanenv -B /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/:/tmp /home/thomasgrnbk/AP_singu/R.simg Rscript /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/script-files/plot_compound-size-profile.R TMP=/faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/ CATEGORY=all FOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/plots/raw-data/ PLOTdir=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/plots/size-profiles/

Attaching package: ‘plotly’

The following objects are masked from ‘package:plyr’:

    arrange, mutate, rename, summarise

The following object is masked from ‘package:ggplot2’:

    last_plot

The following object is masked from ‘package:stats’:

    filter

The following object is masked from ‘package:graphics’:

    layout

Warning message:
In min(FILLEdsizes$length) : no non-missing arguments to min; returning Inf
Warning message:
In max(FILLEdsizes$length) :
  no non-missing arguments to max; returning -Inf
Saving 7 x 7 in image
Saving 7 x 7 in image
Error: Faceting variables must have at least one value
Backtrace:
     █
  1. └─ggplot2::ggsave(outFILE, x)
  2.   ├─grid::grid.draw(plot)
  3.   └─ggplot2:::grid.draw.ggplot(plot)
  4.     ├─base::print(x)
  5.     └─ggplot2:::print.ggplot(x)
  6.       ├─ggplot2::ggplot_build(x)
  7.       └─ggplot2:::ggplot_build.ggplot(x)
  8.         └─layout$setup(data, plot$data, plot$plot_env)
  9.           └─ggplot2:::f(..., self = self)
 10.             └─self$facet$compute_layout(data, self$facet_params)
 11.               └─ggplot2:::f(...)
 12.                 ├─ggplot2:::unrowname(...)
 13.                 │ └─base::is.data.frame(x)
 14.                 └─ggplot2::combine_vars(data, params$plot_env, vars, drop = params$drop)
Execution halted
+ for CATEGORY in all filtered TE rRNA miRNA
+ SWITCH=N
+ read NAME
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG/size-profiles/
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG/normalization.txt
++ cut -f 1
++ tr ' ' '\t'
++ tail -n 1
+ NORM=0
+ [[ N == N ]]
+ awk -v 'OFS=\t' -v NORM=0 '{
          print $1,$2/NORM
        }' /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG/size-profiles/size-profile_sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG-filtered.txt
awk: cmd. line:2: (FILENAME=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG/size-profiles/size-profile_sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG-filtered.txt FNR=1) fatal: division by zero attempted
+ SWITCH=Y
+ read NAME
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA/size-profiles/
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA/normalization.txt
++ cut -f 1
++ tr ' ' '\t'
++ tail -n 1
+ NORM=0
+ [[ Y == N ]]
+ awk -v 'OFS=\t' -v NORM=0 '{
          print $1,$2/NORM
        }' /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA/size-profiles/size-profile_sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA-filtered.txt
awk: cmd. line:2: (FILENAME=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA/size-profiles/size-profile_sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA-filtered.txt FNR=1) fatal: division by zero attempted
+ join /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMPnorm.txt
+ mv /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP2.txt /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt
+ read NAME
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT/size-profiles/
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT/normalization.txt
++ cut -f 1
++ tr ' ' '\t'
++ tail -n 1
+ NORM=0
+ [[ Y == N ]]
+ awk -v 'OFS=\t' -v NORM=0 '{
          print $1,$2/NORM
        }' /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT/size-profiles/size-profile_sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT-filtered.txt
awk: cmd. line:2: (FILENAME=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT/size-profiles/size-profile_sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT-filtered.txt FNR=1) fatal: division by zero attempted
+ join /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMPnorm.txt
+ mv /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP2.txt /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt
+ read NAME
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA/size-profiles/
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA/normalization.txt
++ cut -f 1
++ tr ' ' '\t'
++ tail -n 1
+ NORM=0
+ [[ Y == N ]]
+ awk -v 'OFS=\t' -v NORM=0 '{
          print $1,$2/NORM
        }' /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA/size-profiles/size-profile_sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA-filtered.txt
awk: cmd. line:2: (FILENAME=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA/size-profiles/size-profile_sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA-filtered.txt FNR=1) fatal: division by zero attempted
+ join /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMPnorm.txt
+ mv /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP2.txt /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt
+ read NAME
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT/size-profiles/
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT/normalization.txt
++ cut -f 1
++ tr ' ' '\t'
++ tail -n 1
+ NORM=0
+ [[ Y == N ]]
+ awk -v 'OFS=\t' -v NORM=0 '{
          print $1,$2/NORM
        }' /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT/size-profiles/size-profile_sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT-filtered.txt
awk: cmd. line:2: (FILENAME=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT/size-profiles/size-profile_sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT-filtered.txt FNR=1) fatal: division by zero attempted
+ join /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMPnorm.txt
+ mv /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP2.txt /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt
+ read NAME
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG/size-profiles/
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG/normalization.txt
++ cut -f 1
++ tr ' ' '\t'
++ tail -n 1
+ NORM=0
+ [[ Y == N ]]
+ awk -v 'OFS=\t' -v NORM=0 '{
          print $1,$2/NORM
        }' /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG/size-profiles/size-profile_sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG-filtered.txt
awk: cmd. line:2: (FILENAME=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG/size-profiles/size-profile_sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG-filtered.txt FNR=1) fatal: division by zero attempted
+ join /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMPnorm.txt
+ mv /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP2.txt /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt
+ read NAME
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA/size-profiles/
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA/normalization.txt
++ cut -f 1
++ tr ' ' '\t'
++ tail -n 1
+ NORM=0
+ [[ Y == N ]]
+ awk -v 'OFS=\t' -v NORM=0 '{
          print $1,$2/NORM
        }' /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA/size-profiles/size-profile_sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA-filtered.txt
awk: cmd. line:2: (FILENAME=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA/size-profiles/size-profile_sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA-filtered.txt FNR=1) fatal: division by zero attempted
+ join /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMPnorm.txt
+ mv /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP2.txt /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt
+ read NAME
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT/size-profiles/
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT/normalization.txt
++ cut -f 1
++ tr ' ' '\t'
++ tail -n 1
+ NORM=0
+ [[ Y == N ]]
+ awk -v 'OFS=\t' -v NORM=0 '{
          print $1,$2/NORM
        }' /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT/size-profiles/size-profile_sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT-filtered.txt
awk: cmd. line:2: (FILENAME=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT/size-profiles/size-profile_sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT-filtered.txt FNR=1) fatal: division by zero attempted
+ join /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMPnorm.txt
+ mv /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP2.txt /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt
+ read NAME
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG/size-profiles/
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG/normalization.txt
++ cut -f 1
++ tr ' ' '\t'
++ tail -n 1
+ NORM=0
+ [[ Y == N ]]
+ awk -v 'OFS=\t' -v NORM=0 '{
          print $1,$2/NORM
        }' /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG/size-profiles/size-profile_sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG-filtered.txt
awk: cmd. line:2: (FILENAME=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG/size-profiles/size-profile_sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG-filtered.txt FNR=1) fatal: division by zero attempted
+ join /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMPnorm.txt
+ mv /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP2.txt /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt
+ read NAME
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG/size-profiles/
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG/normalization.txt
++ cut -f 1
++ tr ' ' '\t'
++ tail -n 1
+ NORM=0
+ [[ Y == N ]]
+ awk -v 'OFS=\t' -v NORM=0 '{
          print $1,$2/NORM
        }' /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG/size-profiles/size-profile_sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG-filtered.txt
awk: cmd. line:2: (FILENAME=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG/size-profiles/size-profile_sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG-filtered.txt FNR=1) fatal: division by zero attempted
+ join /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMPnorm.txt
+ mv /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP2.txt /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt
+ read NAME
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA/size-profiles/
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA/normalization.txt
++ cut -f 1
++ tr ' ' '\t'
++ tail -n 1
+ NORM=0
+ [[ Y == N ]]
+ awk -v 'OFS=\t' -v NORM=0 '{
          print $1,$2/NORM
        }' /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA/size-profiles/size-profile_sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA-filtered.txt
awk: cmd. line:2: (FILENAME=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA/size-profiles/size-profile_sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA-filtered.txt FNR=1) fatal: division by zero attempted
+ join /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMPnorm.txt
+ mv /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP2.txt /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt
+ read NAME
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA/size-profiles/
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA/normalization.txt
++ cut -f 1
++ tr ' ' '\t'
++ tail -n 1
+ NORM=0
+ [[ Y == N ]]
+ awk -v 'OFS=\t' -v NORM=0 '{
          print $1,$2/NORM
        }' /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA/size-profiles/size-profile_sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA-filtered.txt
awk: cmd. line:2: (FILENAME=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA/size-profiles/size-profile_sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA-filtered.txt FNR=1) fatal: division by zero attempted
+ join /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMPnorm.txt
+ mv /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP2.txt /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt
+ read NAME
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC/size-profiles/
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC/normalization.txt
++ cut -f 1
++ tail -n 1
++ tr ' ' '\t'
+ NORM=0
+ [[ Y == N ]]
+ awk -v 'OFS=\t' -v NORM=0 '{
          print $1,$2/NORM
        }' /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC/size-profiles/size-profile_sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC-filtered.txt
awk: cmd. line:2: (FILENAME=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC/size-profiles/size-profile_sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC-filtered.txt FNR=1) fatal: division by zero attempted
+ join /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMPnorm.txt
+ mv /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP2.txt /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt
+ read NAME
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA/size-profiles/
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA/normalization.txt
++ cut -f 1
++ tr ' ' '\t'
++ tail -n 1
+ NORM=0
+ [[ Y == N ]]
+ awk -v 'OFS=\t' -v NORM=0 '{
          print $1,$2/NORM
        }' /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA/size-profiles/size-profile_sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA-filtered.txt
awk: cmd. line:2: (FILENAME=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA/size-profiles/size-profile_sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA-filtered.txt FNR=1) fatal: division by zero attempted
+ join /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMPnorm.txt
+ mv /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP2.txt /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt
+ read NAME
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC/size-profiles/
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC/normalization.txt
++ cut -f 1
++ tr ' ' '\t'
++ tail -n 1
+ NORM=0
+ [[ Y == N ]]
+ awk -v 'OFS=\t' -v NORM=0 '{
          print $1,$2/NORM
        }' /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC/size-profiles/size-profile_sRNAseq_HsBam_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC-filtered.txt
awk: cmd. line:2: (FILENAME=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC/size-profiles/size-profile_sRNAseq_HsBam_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC-filtered.txt FNR=1) fatal: division by zero attempted
+ join /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMPnorm.txt
+ mv /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP2.txt /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt
+ read NAME
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repB_283080_sRBC_GTCAG/size-profiles/
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repB_283080_sRBC_GTCAG/normalization.txt
++ tr ' ' '\t'
++ cut -f 1
++ tail -n 1
+ NORM=0
+ [[ Y == N ]]
+ awk -v 'OFS=\t' -v NORM=0 '{
          print $1,$2/NORM
        }' /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repB_283080_sRBC_GTCAG/size-profiles/size-profile_sRNAseq_HsBam_ControlKD_00hAHS_repB_283080_sRBC_GTCAG-filtered.txt
awk: cmd. line:2: (FILENAME=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repB_283080_sRBC_GTCAG/size-profiles/size-profile_sRNAseq_HsBam_ControlKD_00hAHS_repB_283080_sRBC_GTCAG-filtered.txt FNR=1) fatal: division by zero attempted
+ join /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMPnorm.txt
+ mv /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP2.txt /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt
+ read NAME
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repC_283081_sRBC_CAGTG/size-profiles/
++ tail -n 1
++ tr ' ' '\t'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repC_283081_sRBC_CAGTG/normalization.txt
++ cut -f 1
+ NORM=0
+ [[ Y == N ]]
+ awk -v 'OFS=\t' -v NORM=0 '{
          print $1,$2/NORM
        }' /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repC_283081_sRBC_CAGTG/size-profiles/size-profile_sRNAseq_HsBam_ControlKD_00hAHS_repC_283081_sRBC_CAGTG-filtered.txt
awk: cmd. line:2: (FILENAME=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repC_283081_sRBC_CAGTG/size-profiles/size-profile_sRNAseq_HsBam_ControlKD_00hAHS_repC_283081_sRBC_CAGTG-filtered.txt FNR=1) fatal: division by zero attempted
+ join /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMPnorm.txt
+ mv /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP2.txt /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt
+ read NAME
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repD_283082_sRBC_TGACT/size-profiles/
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repD_283082_sRBC_TGACT/normalization.txt
++ cut -f 1
++ tr ' ' '\t'
++ tail -n 1
+ NORM=0
+ [[ Y == N ]]
+ awk -v 'OFS=\t' -v NORM=0 '{
          print $1,$2/NORM
        }' /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repD_283082_sRBC_TGACT/size-profiles/size-profile_sRNAseq_HsBam_ControlKD_68hAHS_repD_283082_sRBC_TGACT-filtered.txt
awk: cmd. line:2: (FILENAME=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repD_283082_sRBC_TGACT/size-profiles/size-profile_sRNAseq_HsBam_ControlKD_68hAHS_repD_283082_sRBC_TGACT-filtered.txt FNR=1) fatal: division by zero attempted
+ join /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMPnorm.txt
+ mv /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP2.txt /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt
+ read NAME
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repB_283080_sRBC_ATGGA/size-profiles/
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repB_283080_sRBC_ATGGA/normalization.txt
++ cut -f 1
++ tr ' ' '\t'
++ tail -n 1
+ NORM=0
+ [[ Y == N ]]
+ awk -v 'OFS=\t' -v NORM=0 '{
          print $1,$2/NORM
        }' /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repB_283080_sRBC_ATGGA/size-profiles/size-profile_sRNAseq_HsBam_PiwiKD_68hAHS_repB_283080_sRBC_ATGGA-filtered.txt
awk: cmd. line:2: (FILENAME=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repB_283080_sRBC_ATGGA/size-profiles/size-profile_sRNAseq_HsBam_PiwiKD_68hAHS_repB_283080_sRBC_ATGGA-filtered.txt FNR=1) fatal: division by zero attempted
+ join /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMPnorm.txt
+ mv /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP2.txt /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt
+ read NAME
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repB_283080_sRBC_TGACT/size-profiles/
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repB_283080_sRBC_TGACT/normalization.txt
++ cut -f 1
++ tail -n 1
++ tr ' ' '\t'
+ NORM=0
+ [[ Y == N ]]
+ awk -v 'OFS=\t' -v NORM=0 '{
          print $1,$2/NORM
        }' /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repB_283080_sRBC_TGACT/size-profiles/size-profile_sRNAseq_HsBam_ControlKD_68hAHS_repB_283080_sRBC_TGACT-filtered.txt
awk: cmd. line:2: (FILENAME=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repB_283080_sRBC_TGACT/size-profiles/size-profile_sRNAseq_HsBam_ControlKD_68hAHS_repB_283080_sRBC_TGACT-filtered.txt FNR=1) fatal: division by zero attempted
+ join /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMPnorm.txt
+ mv /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP2.txt /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt
+ read NAME
+ echo length sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA sRNAseq_HsBam_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC sRNAseq_HsBam_ControlKD_00hAHS_repB_283080_sRBC_GTCAG sRNAseq_HsBam_ControlKD_00hAHS_repC_283081_sRBC_CAGTG sRNAseq_HsBam_ControlKD_68hAHS_repD_283082_sRBC_TGACT sRNAseq_HsBam_PiwiKD_68hAHS_repB_283080_sRBC_ATGGA sRNAseq_HsBam_ControlKD_68hAHS_repB_283080_sRBC_TGACT
+ tr ' ' '\t'
+ sort -k1,1n /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt
+ tr ' ' '\t'
+ Rscript /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/script-files/plot_compound-size-profile.R TMP=/faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/ CATEGORY=filtered FOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/plots/raw-data/ PLOTdir=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/plots/size-profiles/
+ singularity exec --cleanenv -B /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/:/tmp /home/thomasgrnbk/AP_singu/R.simg Rscript /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/script-files/plot_compound-size-profile.R TMP=/faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/ CATEGORY=filtered FOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/plots/raw-data/ PLOTdir=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/plots/size-profiles/

Attaching package: ‘plotly’

The following objects are masked from ‘package:plyr’:

    arrange, mutate, rename, summarise

The following object is masked from ‘package:ggplot2’:

    last_plot

The following object is masked from ‘package:stats’:

    filter

The following object is masked from ‘package:graphics’:

    layout

Warning message:
In min(FILLEdsizes$length) : no non-missing arguments to min; returning Inf
Warning message:
In max(FILLEdsizes$length) :
  no non-missing arguments to max; returning -Inf
Saving 7 x 7 in image
Saving 7 x 7 in image
Error: Faceting variables must have at least one value
Backtrace:
     █
  1. └─ggplot2::ggsave(outFILE, x)
  2.   ├─grid::grid.draw(plot)
  3.   └─ggplot2:::grid.draw.ggplot(plot)
  4.     ├─base::print(x)
  5.     └─ggplot2:::print.ggplot(x)
  6.       ├─ggplot2::ggplot_build(x)
  7.       └─ggplot2:::ggplot_build.ggplot(x)
  8.         └─layout$setup(data, plot$data, plot$plot_env)
  9.           └─ggplot2:::f(..., self = self)
 10.             └─self$facet$compute_layout(data, self$facet_params)
 11.               └─ggplot2:::f(...)
 12.                 ├─ggplot2:::unrowname(...)
 13.                 │ └─base::is.data.frame(x)
 14.                 └─ggplot2::combine_vars(data, params$plot_env, vars, drop = params$drop)
Execution halted
+ for CATEGORY in all filtered TE rRNA miRNA
+ SWITCH=N
+ read NAME
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG/size-profiles/
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG/normalization.txt
++ cut -f 1
++ tail -n 1
++ tr ' ' '\t'
+ NORM=0
+ [[ N == N ]]
+ awk -v 'OFS=\t' -v NORM=0 '{
          print $1,$2/NORM
        }' /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG/size-profiles/size-profile_sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG-TE.txt
awk: cmd. line:2: (FILENAME=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG/size-profiles/size-profile_sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG-TE.txt FNR=1) fatal: division by zero attempted
+ SWITCH=Y
+ read NAME
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA/size-profiles/
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA/normalization.txt
++ tail -n 1
++ cut -f 1
++ tr ' ' '\t'
+ NORM=0
+ [[ Y == N ]]
+ awk -v 'OFS=\t' -v NORM=0 '{
          print $1,$2/NORM
        }' /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA/size-profiles/size-profile_sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA-TE.txt
awk: cmd. line:2: (FILENAME=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA/size-profiles/size-profile_sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA-TE.txt FNR=1) fatal: division by zero attempted
+ join /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMPnorm.txt
+ mv /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP2.txt /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt
+ read NAME
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT/size-profiles/
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT/normalization.txt
++ cut -f 1
++ tail -n 1
++ tr ' ' '\t'
+ NORM=0
+ [[ Y == N ]]
+ awk -v 'OFS=\t' -v NORM=0 '{
          print $1,$2/NORM
        }' /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT/size-profiles/size-profile_sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT-TE.txt
awk: cmd. line:2: (FILENAME=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT/size-profiles/size-profile_sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT-TE.txt FNR=1) fatal: division by zero attempted
+ join /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMPnorm.txt
+ mv /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP2.txt /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt
+ read NAME
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA/size-profiles/
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA/normalization.txt
++ tail -n 1
++ cut -f 1
++ tr ' ' '\t'
+ NORM=0
+ [[ Y == N ]]
+ awk -v 'OFS=\t' -v NORM=0 '{
          print $1,$2/NORM
        }' /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA/size-profiles/size-profile_sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA-TE.txt
awk: cmd. line:2: (FILENAME=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA/size-profiles/size-profile_sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA-TE.txt FNR=1) fatal: division by zero attempted
+ join /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMPnorm.txt
+ mv /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP2.txt /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt
+ read NAME
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT/size-profiles/
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT/normalization.txt
++ cut -f 1
++ tail -n 1
++ tr ' ' '\t'
+ NORM=0
+ [[ Y == N ]]
+ awk -v 'OFS=\t' -v NORM=0 '{
          print $1,$2/NORM
        }' /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT/size-profiles/size-profile_sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT-TE.txt
awk: cmd. line:2: (FILENAME=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT/size-profiles/size-profile_sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT-TE.txt FNR=1) fatal: division by zero attempted
+ join /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMPnorm.txt
+ mv /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP2.txt /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt
+ read NAME
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG/size-profiles/
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG/normalization.txt
++ cut -f 1
++ tr ' ' '\t'
++ tail -n 1
+ NORM=0
+ [[ Y == N ]]
+ awk -v 'OFS=\t' -v NORM=0 '{
          print $1,$2/NORM
        }' /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG/size-profiles/size-profile_sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG-TE.txt
awk: cmd. line:2: (FILENAME=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG/size-profiles/size-profile_sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG-TE.txt FNR=1) fatal: division by zero attempted
+ join /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMPnorm.txt
+ mv /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP2.txt /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt
+ read NAME
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA/size-profiles/
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA/normalization.txt
++ cut -f 1
++ tr ' ' '\t'
++ tail -n 1
+ NORM=0
+ [[ Y == N ]]
+ awk -v 'OFS=\t' -v NORM=0 '{
          print $1,$2/NORM
        }' /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA/size-profiles/size-profile_sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA-TE.txt
awk: cmd. line:2: (FILENAME=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA/size-profiles/size-profile_sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA-TE.txt FNR=1) fatal: division by zero attempted
+ join /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMPnorm.txt
+ mv /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP2.txt /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt
+ read NAME
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT/size-profiles/
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT/normalization.txt
++ cut -f 1
++ tr ' ' '\t'
++ tail -n 1
+ NORM=0
+ [[ Y == N ]]
+ awk -v 'OFS=\t' -v NORM=0 '{
          print $1,$2/NORM
        }' /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT/size-profiles/size-profile_sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT-TE.txt
awk: cmd. line:2: (FILENAME=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT/size-profiles/size-profile_sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT-TE.txt FNR=1) fatal: division by zero attempted
+ join /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMPnorm.txt
+ mv /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP2.txt /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt
+ read NAME
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG/size-profiles/
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG/normalization.txt
++ tail -n 1
++ tr ' ' '\t'
++ cut -f 1
+ NORM=0
+ [[ Y == N ]]
+ awk -v 'OFS=\t' -v NORM=0 '{
          print $1,$2/NORM
        }' /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG/size-profiles/size-profile_sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG-TE.txt
awk: cmd. line:2: (FILENAME=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG/size-profiles/size-profile_sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG-TE.txt FNR=1) fatal: division by zero attempted
+ join /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMPnorm.txt
+ mv /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP2.txt /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt
+ read NAME
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG/size-profiles/
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG/normalization.txt
++ cut -f 1
++ tail -n 1
++ tr ' ' '\t'
+ NORM=0
+ [[ Y == N ]]
+ awk -v 'OFS=\t' -v NORM=0 '{
          print $1,$2/NORM
        }' /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG/size-profiles/size-profile_sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG-TE.txt
awk: cmd. line:2: (FILENAME=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG/size-profiles/size-profile_sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG-TE.txt FNR=1) fatal: division by zero attempted
+ join /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMPnorm.txt
+ mv /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP2.txt /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt
+ read NAME
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA/size-profiles/
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA/normalization.txt
++ tail -n 1
++ tr ' ' '\t'
++ cut -f 1
+ NORM=0
+ [[ Y == N ]]
+ awk -v 'OFS=\t' -v NORM=0 '{
          print $1,$2/NORM
        }' /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA/size-profiles/size-profile_sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA-TE.txt
awk: cmd. line:2: (FILENAME=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA/size-profiles/size-profile_sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA-TE.txt FNR=1) fatal: division by zero attempted
+ join /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMPnorm.txt
+ mv /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP2.txt /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt
+ read NAME
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA/size-profiles/
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA/normalization.txt
++ tail -n 1
++ tr ' ' '\t'
++ cut -f 1
+ NORM=0
+ [[ Y == N ]]
+ awk -v 'OFS=\t' -v NORM=0 '{
          print $1,$2/NORM
        }' /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA/size-profiles/size-profile_sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA-TE.txt
awk: cmd. line:2: (FILENAME=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA/size-profiles/size-profile_sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA-TE.txt FNR=1) fatal: division by zero attempted
+ join /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMPnorm.txt
+ mv /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP2.txt /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt
+ read NAME
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC/size-profiles/
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC/normalization.txt
++ tail -n 1
++ cut -f 1
++ tr ' ' '\t'
+ NORM=0
+ [[ Y == N ]]
+ awk -v 'OFS=\t' -v NORM=0 '{
          print $1,$2/NORM
        }' /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC/size-profiles/size-profile_sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC-TE.txt
awk: cmd. line:2: (FILENAME=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC/size-profiles/size-profile_sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC-TE.txt FNR=1) fatal: division by zero attempted
+ join /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMPnorm.txt
+ mv /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP2.txt /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt
+ read NAME
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA/size-profiles/
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA/normalization.txt
++ cut -f 1
++ tr ' ' '\t'
++ tail -n 1
+ NORM=0
+ [[ Y == N ]]
+ awk -v 'OFS=\t' -v NORM=0 '{
          print $1,$2/NORM
        }' /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA/size-profiles/size-profile_sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA-TE.txt
awk: cmd. line:2: (FILENAME=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA/size-profiles/size-profile_sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA-TE.txt FNR=1) fatal: division by zero attempted
+ join /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMPnorm.txt
+ mv /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP2.txt /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt
+ read NAME
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC/size-profiles/
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC/normalization.txt
++ cut -f 1
++ tr ' ' '\t'
++ tail -n 1
+ NORM=0
+ [[ Y == N ]]
+ awk -v 'OFS=\t' -v NORM=0 '{
          print $1,$2/NORM
        }' /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC/size-profiles/size-profile_sRNAseq_HsBam_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC-TE.txt
awk: cmd. line:2: (FILENAME=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC/size-profiles/size-profile_sRNAseq_HsBam_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC-TE.txt FNR=1) fatal: division by zero attempted
+ join /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMPnorm.txt
+ mv /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP2.txt /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt
+ read NAME
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repB_283080_sRBC_GTCAG/size-profiles/
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repB_283080_sRBC_GTCAG/normalization.txt
++ cut -f 1
++ tr ' ' '\t'
++ tail -n 1
+ NORM=0
+ [[ Y == N ]]
+ awk -v 'OFS=\t' -v NORM=0 '{
          print $1,$2/NORM
        }' /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repB_283080_sRBC_GTCAG/size-profiles/size-profile_sRNAseq_HsBam_ControlKD_00hAHS_repB_283080_sRBC_GTCAG-TE.txt
awk: cmd. line:2: (FILENAME=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repB_283080_sRBC_GTCAG/size-profiles/size-profile_sRNAseq_HsBam_ControlKD_00hAHS_repB_283080_sRBC_GTCAG-TE.txt FNR=1) fatal: division by zero attempted
+ join /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMPnorm.txt
+ mv /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP2.txt /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt
+ read NAME
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repC_283081_sRBC_CAGTG/size-profiles/
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repC_283081_sRBC_CAGTG/normalization.txt
++ tail -n 1
++ tr ' ' '\t'
++ cut -f 1
+ NORM=0
+ [[ Y == N ]]
+ awk -v 'OFS=\t' -v NORM=0 '{
          print $1,$2/NORM
        }' /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repC_283081_sRBC_CAGTG/size-profiles/size-profile_sRNAseq_HsBam_ControlKD_00hAHS_repC_283081_sRBC_CAGTG-TE.txt
awk: cmd. line:2: (FILENAME=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repC_283081_sRBC_CAGTG/size-profiles/size-profile_sRNAseq_HsBam_ControlKD_00hAHS_repC_283081_sRBC_CAGTG-TE.txt FNR=1) fatal: division by zero attempted
+ join /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMPnorm.txt
+ mv /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP2.txt /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt
+ read NAME
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repD_283082_sRBC_TGACT/size-profiles/
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repD_283082_sRBC_TGACT/normalization.txt
++ tail -n 1
++ cut -f 1
++ tr ' ' '\t'
+ NORM=0
+ [[ Y == N ]]
+ awk -v 'OFS=\t' -v NORM=0 '{
          print $1,$2/NORM
        }' /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repD_283082_sRBC_TGACT/size-profiles/size-profile_sRNAseq_HsBam_ControlKD_68hAHS_repD_283082_sRBC_TGACT-TE.txt
awk: cmd. line:2: (FILENAME=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repD_283082_sRBC_TGACT/size-profiles/size-profile_sRNAseq_HsBam_ControlKD_68hAHS_repD_283082_sRBC_TGACT-TE.txt FNR=1) fatal: division by zero attempted
+ join /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMPnorm.txt
+ mv /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP2.txt /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt
+ read NAME
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repB_283080_sRBC_ATGGA/size-profiles/
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repB_283080_sRBC_ATGGA/normalization.txt
++ tail -n 1
++ cut -f 1
++ tr ' ' '\t'
+ NORM=0
+ [[ Y == N ]]
+ awk -v 'OFS=\t' -v NORM=0 '{
          print $1,$2/NORM
        }' /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repB_283080_sRBC_ATGGA/size-profiles/size-profile_sRNAseq_HsBam_PiwiKD_68hAHS_repB_283080_sRBC_ATGGA-TE.txt
awk: cmd. line:2: (FILENAME=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repB_283080_sRBC_ATGGA/size-profiles/size-profile_sRNAseq_HsBam_PiwiKD_68hAHS_repB_283080_sRBC_ATGGA-TE.txt FNR=1) fatal: division by zero attempted
+ join /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMPnorm.txt
+ mv /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP2.txt /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt
+ read NAME
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repB_283080_sRBC_TGACT/size-profiles/
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repB_283080_sRBC_TGACT/normalization.txt
++ cut -f 1
++ tr ' ' '\t'
++ tail -n 1
+ NORM=0
+ [[ Y == N ]]
+ awk -v 'OFS=\t' -v NORM=0 '{
          print $1,$2/NORM
        }' /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repB_283080_sRBC_TGACT/size-profiles/size-profile_sRNAseq_HsBam_ControlKD_68hAHS_repB_283080_sRBC_TGACT-TE.txt
awk: cmd. line:2: (FILENAME=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repB_283080_sRBC_TGACT/size-profiles/size-profile_sRNAseq_HsBam_ControlKD_68hAHS_repB_283080_sRBC_TGACT-TE.txt FNR=1) fatal: division by zero attempted
+ join /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMPnorm.txt
+ mv /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP2.txt /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt
+ read NAME
+ echo length sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA sRNAseq_HsBam_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC sRNAseq_HsBam_ControlKD_00hAHS_repB_283080_sRBC_GTCAG sRNAseq_HsBam_ControlKD_00hAHS_repC_283081_sRBC_CAGTG sRNAseq_HsBam_ControlKD_68hAHS_repD_283082_sRBC_TGACT sRNAseq_HsBam_PiwiKD_68hAHS_repB_283080_sRBC_ATGGA sRNAseq_HsBam_ControlKD_68hAHS_repB_283080_sRBC_TGACT
+ tr ' ' '\t'
+ sort -k1,1n /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt
+ tr ' ' '\t'
+ Rscript /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/script-files/plot_compound-size-profile.R TMP=/faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/ CATEGORY=TE FOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/plots/raw-data/ PLOTdir=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/plots/size-profiles/
+ singularity exec --cleanenv -B /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/:/tmp /home/thomasgrnbk/AP_singu/R.simg Rscript /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/script-files/plot_compound-size-profile.R TMP=/faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/ CATEGORY=TE FOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/plots/raw-data/ PLOTdir=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/plots/size-profiles/

Attaching package: ‘plotly’

The following objects are masked from ‘package:plyr’:

    arrange, mutate, rename, summarise

The following object is masked from ‘package:ggplot2’:

    last_plot

The following object is masked from ‘package:stats’:

    filter

The following object is masked from ‘package:graphics’:

    layout

Warning message:
In min(FILLEdsizes$length) : no non-missing arguments to min; returning Inf
Warning message:
In max(FILLEdsizes$length) :
  no non-missing arguments to max; returning -Inf
Saving 7 x 7 in image
Saving 7 x 7 in image
Error: Faceting variables must have at least one value
Backtrace:
     █
  1. └─ggplot2::ggsave(outFILE, x)
  2.   ├─grid::grid.draw(plot)
  3.   └─ggplot2:::grid.draw.ggplot(plot)
  4.     ├─base::print(x)
  5.     └─ggplot2:::print.ggplot(x)
  6.       ├─ggplot2::ggplot_build(x)
  7.       └─ggplot2:::ggplot_build.ggplot(x)
  8.         └─layout$setup(data, plot$data, plot$plot_env)
  9.           └─ggplot2:::f(..., self = self)
 10.             └─self$facet$compute_layout(data, self$facet_params)
 11.               └─ggplot2:::f(...)
 12.                 ├─ggplot2:::unrowname(...)
 13.                 │ └─base::is.data.frame(x)
 14.                 └─ggplot2::combine_vars(data, params$plot_env, vars, drop = params$drop)
Execution halted
+ for CATEGORY in all filtered TE rRNA miRNA
+ SWITCH=N
+ read NAME
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG/size-profiles/
++ cut -f 1
++ tr ' ' '\t'
++ tail -n 1
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG/normalization.txt
+ NORM=0
+ [[ N == N ]]
+ awk -v 'OFS=\t' -v NORM=0 '{
          print $1,$2/NORM
        }' /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG/size-profiles/size-profile_sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG-rRNA.txt
awk: cmd. line:2: (FILENAME=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG/size-profiles/size-profile_sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG-rRNA.txt FNR=1) fatal: division by zero attempted
+ SWITCH=Y
+ read NAME
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA/size-profiles/
++ cut -f 1
++ tr ' ' '\t'
++ tail -n 1
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA/normalization.txt
+ NORM=0
+ [[ Y == N ]]
+ awk -v 'OFS=\t' -v NORM=0 '{
          print $1,$2/NORM
        }' /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA/size-profiles/size-profile_sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA-rRNA.txt
awk: cmd. line:2: (FILENAME=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA/size-profiles/size-profile_sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA-rRNA.txt FNR=1) fatal: division by zero attempted
+ join /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMPnorm.txt
+ mv /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP2.txt /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt
+ read NAME
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT/size-profiles/
++ cut -f 1
++ tr ' ' '\t'
++ tail -n 1
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT/normalization.txt
+ NORM=0
+ [[ Y == N ]]
+ awk -v 'OFS=\t' -v NORM=0 '{
          print $1,$2/NORM
        }' /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT/size-profiles/size-profile_sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT-rRNA.txt
awk: cmd. line:2: (FILENAME=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT/size-profiles/size-profile_sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT-rRNA.txt FNR=1) fatal: division by zero attempted
+ join /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMPnorm.txt
+ mv /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP2.txt /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt
+ read NAME
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA/size-profiles/
++ cut -f 1
++ tr ' ' '\t'
++ tail -n 1
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA/normalization.txt
+ NORM=0
+ [[ Y == N ]]
+ awk -v 'OFS=\t' -v NORM=0 '{
          print $1,$2/NORM
        }' /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA/size-profiles/size-profile_sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA-rRNA.txt
awk: cmd. line:2: (FILENAME=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA/size-profiles/size-profile_sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA-rRNA.txt FNR=1) fatal: division by zero attempted
+ join /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMPnorm.txt
+ mv /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP2.txt /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt
+ read NAME
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT/size-profiles/
++ cut -f 1
++ tr ' ' '\t'
++ tail -n 1
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT/normalization.txt
+ NORM=0
+ [[ Y == N ]]
+ awk -v 'OFS=\t' -v NORM=0 '{
          print $1,$2/NORM
        }' /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT/size-profiles/size-profile_sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT-rRNA.txt
awk: cmd. line:2: (FILENAME=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT/size-profiles/size-profile_sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT-rRNA.txt FNR=1) fatal: division by zero attempted
+ join /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMPnorm.txt
+ mv /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP2.txt /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt
+ read NAME
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG/size-profiles/
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG/normalization.txt
++ cut -f 1
++ tr ' ' '\t'
++ tail -n 1
+ NORM=0
+ [[ Y == N ]]
+ awk -v 'OFS=\t' -v NORM=0 '{
          print $1,$2/NORM
        }' /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG/size-profiles/size-profile_sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG-rRNA.txt
awk: cmd. line:2: (FILENAME=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG/size-profiles/size-profile_sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG-rRNA.txt FNR=1) fatal: division by zero attempted
+ join /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMPnorm.txt
+ mv /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP2.txt /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt
+ read NAME
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA/size-profiles/
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA/normalization.txt
++ cut -f 1
++ tr ' ' '\t'
++ tail -n 1
+ NORM=0
+ [[ Y == N ]]
+ awk -v 'OFS=\t' -v NORM=0 '{
          print $1,$2/NORM
        }' /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA/size-profiles/size-profile_sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA-rRNA.txt
awk: cmd. line:2: (FILENAME=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA/size-profiles/size-profile_sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA-rRNA.txt FNR=1) fatal: division by zero attempted
+ join /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMPnorm.txt
+ mv /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP2.txt /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt
+ read NAME
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT/size-profiles/
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT/normalization.txt
++ cut -f 1
++ tr ' ' '\t'
++ tail -n 1
+ NORM=0
+ [[ Y == N ]]
+ awk -v 'OFS=\t' -v NORM=0 '{
          print $1,$2/NORM
        }' /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT/size-profiles/size-profile_sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT-rRNA.txt
awk: cmd. line:2: (FILENAME=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT/size-profiles/size-profile_sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT-rRNA.txt FNR=1) fatal: division by zero attempted
+ join /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMPnorm.txt
+ mv /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP2.txt /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt
+ read NAME
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG/size-profiles/
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG/normalization.txt
++ cut -f 1
++ tr ' ' '\t'
++ tail -n 1
+ NORM=0
+ [[ Y == N ]]
+ awk -v 'OFS=\t' -v NORM=0 '{
          print $1,$2/NORM
        }' /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG/size-profiles/size-profile_sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG-rRNA.txt
awk: cmd. line:2: (FILENAME=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG/size-profiles/size-profile_sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG-rRNA.txt FNR=1) fatal: division by zero attempted
+ join /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMPnorm.txt
+ mv /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP2.txt /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt
+ read NAME
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG/size-profiles/
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG/normalization.txt
++ cut -f 1
++ tr ' ' '\t'
++ tail -n 1
+ NORM=0
+ [[ Y == N ]]
+ awk -v 'OFS=\t' -v NORM=0 '{
          print $1,$2/NORM
        }' /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG/size-profiles/size-profile_sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG-rRNA.txt
awk: cmd. line:2: (FILENAME=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG/size-profiles/size-profile_sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG-rRNA.txt FNR=1) fatal: division by zero attempted
+ join /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMPnorm.txt
+ mv /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP2.txt /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt
+ read NAME
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA/size-profiles/
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA/normalization.txt
++ cut -f 1
++ tr ' ' '\t'
++ tail -n 1
+ NORM=0
+ [[ Y == N ]]
+ awk -v 'OFS=\t' -v NORM=0 '{
          print $1,$2/NORM
        }' /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA/size-profiles/size-profile_sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA-rRNA.txt
awk: cmd. line:2: (FILENAME=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA/size-profiles/size-profile_sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA-rRNA.txt FNR=1) fatal: division by zero attempted
+ join /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMPnorm.txt
+ mv /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP2.txt /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt
+ read NAME
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA/size-profiles/
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA/normalization.txt
++ tail -n 1
++ cut -f 1
++ tr ' ' '\t'
+ NORM=0
+ [[ Y == N ]]
+ awk -v 'OFS=\t' -v NORM=0 '{
          print $1,$2/NORM
        }' /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA/size-profiles/size-profile_sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA-rRNA.txt
awk: cmd. line:2: (FILENAME=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA/size-profiles/size-profile_sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA-rRNA.txt FNR=1) fatal: division by zero attempted
+ join /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMPnorm.txt
+ mv /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP2.txt /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt
+ read NAME
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC/size-profiles/
++ cut -f 1
++ tr ' ' '\t'
++ tail -n 1
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC/normalization.txt
+ NORM=0
+ [[ Y == N ]]
+ awk -v 'OFS=\t' -v NORM=0 '{
          print $1,$2/NORM
        }' /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC/size-profiles/size-profile_sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC-rRNA.txt
awk: cmd. line:2: (FILENAME=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC/size-profiles/size-profile_sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC-rRNA.txt FNR=1) fatal: division by zero attempted
+ join /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMPnorm.txt
+ mv /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP2.txt /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt
+ read NAME
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA/size-profiles/
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA/normalization.txt
++ cut -f 1
++ tail -n 1
++ tr ' ' '\t'
+ NORM=0
+ [[ Y == N ]]
+ awk -v 'OFS=\t' -v NORM=0 '{
          print $1,$2/NORM
        }' /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA/size-profiles/size-profile_sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA-rRNA.txt
awk: cmd. line:2: (FILENAME=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA/size-profiles/size-profile_sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA-rRNA.txt FNR=1) fatal: division by zero attempted
+ join /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMPnorm.txt
+ mv /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP2.txt /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt
+ read NAME
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC/size-profiles/
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC/normalization.txt
++ cut -f 1
++ tail -n 1
++ tr ' ' '\t'
+ NORM=0
+ [[ Y == N ]]
+ awk -v 'OFS=\t' -v NORM=0 '{
          print $1,$2/NORM
        }' /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC/size-profiles/size-profile_sRNAseq_HsBam_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC-rRNA.txt
awk: cmd. line:2: (FILENAME=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC/size-profiles/size-profile_sRNAseq_HsBam_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC-rRNA.txt FNR=1) fatal: division by zero attempted
+ join /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMPnorm.txt
+ mv /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP2.txt /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt
+ read NAME
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repB_283080_sRBC_GTCAG/size-profiles/
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repB_283080_sRBC_GTCAG/normalization.txt
++ tr ' ' '\t'
++ cut -f 1
++ tail -n 1
+ NORM=0
+ [[ Y == N ]]
+ awk -v 'OFS=\t' -v NORM=0 '{
          print $1,$2/NORM
        }' /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repB_283080_sRBC_GTCAG/size-profiles/size-profile_sRNAseq_HsBam_ControlKD_00hAHS_repB_283080_sRBC_GTCAG-rRNA.txt
awk: cmd. line:2: (FILENAME=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repB_283080_sRBC_GTCAG/size-profiles/size-profile_sRNAseq_HsBam_ControlKD_00hAHS_repB_283080_sRBC_GTCAG-rRNA.txt FNR=1) fatal: division by zero attempted
+ join /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMPnorm.txt
+ mv /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP2.txt /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt
+ read NAME
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repC_283081_sRBC_CAGTG/size-profiles/
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repC_283081_sRBC_CAGTG/normalization.txt
++ cut -f 1
++ tr ' ' '\t'
++ tail -n 1
+ NORM=0
+ [[ Y == N ]]
+ awk -v 'OFS=\t' -v NORM=0 '{
          print $1,$2/NORM
        }' /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repC_283081_sRBC_CAGTG/size-profiles/size-profile_sRNAseq_HsBam_ControlKD_00hAHS_repC_283081_sRBC_CAGTG-rRNA.txt
awk: cmd. line:2: (FILENAME=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repC_283081_sRBC_CAGTG/size-profiles/size-profile_sRNAseq_HsBam_ControlKD_00hAHS_repC_283081_sRBC_CAGTG-rRNA.txt FNR=1) fatal: division by zero attempted
+ join /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMPnorm.txt
+ mv /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP2.txt /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt
+ read NAME
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repD_283082_sRBC_TGACT/size-profiles/
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repD_283082_sRBC_TGACT/normalization.txt
++ cut -f 1
++ tr ' ' '\t'
++ tail -n 1
+ NORM=0
+ [[ Y == N ]]
+ awk -v 'OFS=\t' -v NORM=0 '{
          print $1,$2/NORM
        }' /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repD_283082_sRBC_TGACT/size-profiles/size-profile_sRNAseq_HsBam_ControlKD_68hAHS_repD_283082_sRBC_TGACT-rRNA.txt
awk: cmd. line:2: (FILENAME=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repD_283082_sRBC_TGACT/size-profiles/size-profile_sRNAseq_HsBam_ControlKD_68hAHS_repD_283082_sRBC_TGACT-rRNA.txt FNR=1) fatal: division by zero attempted
+ join /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMPnorm.txt
+ mv /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP2.txt /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt
+ read NAME
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repB_283080_sRBC_ATGGA/size-profiles/
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repB_283080_sRBC_ATGGA/normalization.txt
++ cut -f 1
++ tr ' ' '\t'
++ tail -n 1
+ NORM=0
+ [[ Y == N ]]
+ awk -v 'OFS=\t' -v NORM=0 '{
          print $1,$2/NORM
        }' /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repB_283080_sRBC_ATGGA/size-profiles/size-profile_sRNAseq_HsBam_PiwiKD_68hAHS_repB_283080_sRBC_ATGGA-rRNA.txt
awk: cmd. line:2: (FILENAME=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repB_283080_sRBC_ATGGA/size-profiles/size-profile_sRNAseq_HsBam_PiwiKD_68hAHS_repB_283080_sRBC_ATGGA-rRNA.txt FNR=1) fatal: division by zero attempted
+ join /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMPnorm.txt
+ mv /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP2.txt /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt
+ read NAME
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repB_283080_sRBC_TGACT/size-profiles/
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repB_283080_sRBC_TGACT/normalization.txt
++ cut -f 1
++ tr ' ' '\t'
++ tail -n 1
+ NORM=0
+ [[ Y == N ]]
+ awk -v 'OFS=\t' -v NORM=0 '{
          print $1,$2/NORM
        }' /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repB_283080_sRBC_TGACT/size-profiles/size-profile_sRNAseq_HsBam_ControlKD_68hAHS_repB_283080_sRBC_TGACT-rRNA.txt
awk: cmd. line:2: (FILENAME=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repB_283080_sRBC_TGACT/size-profiles/size-profile_sRNAseq_HsBam_ControlKD_68hAHS_repB_283080_sRBC_TGACT-rRNA.txt FNR=1) fatal: division by zero attempted
+ join /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMPnorm.txt
+ mv /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP2.txt /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt
+ read NAME
+ echo length sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA sRNAseq_HsBam_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC sRNAseq_HsBam_ControlKD_00hAHS_repB_283080_sRBC_GTCAG sRNAseq_HsBam_ControlKD_00hAHS_repC_283081_sRBC_CAGTG sRNAseq_HsBam_ControlKD_68hAHS_repD_283082_sRBC_TGACT sRNAseq_HsBam_PiwiKD_68hAHS_repB_283080_sRBC_ATGGA sRNAseq_HsBam_ControlKD_68hAHS_repB_283080_sRBC_TGACT
+ tr ' ' '\t'
+ sort -k1,1n /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt
+ tr ' ' '\t'
+ Rscript /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/script-files/plot_compound-size-profile.R TMP=/faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/ CATEGORY=rRNA FOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/plots/raw-data/ PLOTdir=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/plots/size-profiles/
+ singularity exec --cleanenv -B /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/:/tmp /home/thomasgrnbk/AP_singu/R.simg Rscript /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/script-files/plot_compound-size-profile.R TMP=/faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/ CATEGORY=rRNA FOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/plots/raw-data/ PLOTdir=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/plots/size-profiles/

Attaching package: ‘plotly’

The following objects are masked from ‘package:plyr’:

    arrange, mutate, rename, summarise

The following object is masked from ‘package:ggplot2’:

    last_plot

The following object is masked from ‘package:stats’:

    filter

The following object is masked from ‘package:graphics’:

    layout

Warning message:
In min(FILLEdsizes$length) : no non-missing arguments to min; returning Inf
Warning message:
In max(FILLEdsizes$length) :
  no non-missing arguments to max; returning -Inf
Saving 7 x 7 in image
Saving 7 x 7 in image
Error: Faceting variables must have at least one value
Backtrace:
     █
  1. └─ggplot2::ggsave(outFILE, x)
  2.   ├─grid::grid.draw(plot)
  3.   └─ggplot2:::grid.draw.ggplot(plot)
  4.     ├─base::print(x)
  5.     └─ggplot2:::print.ggplot(x)
  6.       ├─ggplot2::ggplot_build(x)
  7.       └─ggplot2:::ggplot_build.ggplot(x)
  8.         └─layout$setup(data, plot$data, plot$plot_env)
  9.           └─ggplot2:::f(..., self = self)
 10.             └─self$facet$compute_layout(data, self$facet_params)
 11.               └─ggplot2:::f(...)
 12.                 ├─ggplot2:::unrowname(...)
 13.                 │ └─base::is.data.frame(x)
 14.                 └─ggplot2::combine_vars(data, params$plot_env, vars, drop = params$drop)
Execution halted
+ for CATEGORY in all filtered TE rRNA miRNA
+ SWITCH=N
+ read NAME
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG/size-profiles/
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG/normalization.txt
++ cut -f 1
++ tr ' ' '\t'
++ tail -n 1
+ NORM=0
+ [[ N == N ]]
+ awk -v 'OFS=\t' -v NORM=0 '{
          print $1,$2/NORM
        }' /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG/size-profiles/size-profile_sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG-miRNA.txt
awk: cmd. line:2: (FILENAME=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG/size-profiles/size-profile_sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG-miRNA.txt FNR=1) fatal: division by zero attempted
+ SWITCH=Y
+ read NAME
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA/size-profiles/
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA/normalization.txt
++ tail -n 1
++ cut -f 1
++ tr ' ' '\t'
+ NORM=0
+ [[ Y == N ]]
+ awk -v 'OFS=\t' -v NORM=0 '{
          print $1,$2/NORM
        }' /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA/size-profiles/size-profile_sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA-miRNA.txt
awk: cmd. line:2: (FILENAME=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA/size-profiles/size-profile_sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA-miRNA.txt FNR=1) fatal: division by zero attempted
+ join /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMPnorm.txt
+ mv /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP2.txt /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt
+ read NAME
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT/size-profiles/
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT/normalization.txt
++ cut -f 1
++ tail -n 1
++ tr ' ' '\t'
+ NORM=0
+ [[ Y == N ]]
+ awk -v 'OFS=\t' -v NORM=0 '{
          print $1,$2/NORM
        }' /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT/size-profiles/size-profile_sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT-miRNA.txt
awk: cmd. line:2: (FILENAME=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT/size-profiles/size-profile_sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT-miRNA.txt FNR=1) fatal: division by zero attempted
+ join /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMPnorm.txt
+ mv /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP2.txt /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt
+ read NAME
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA/size-profiles/
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA/normalization.txt
++ cut -f 1
++ tr ' ' '\t'
++ tail -n 1
+ NORM=0
+ [[ Y == N ]]
+ awk -v 'OFS=\t' -v NORM=0 '{
          print $1,$2/NORM
        }' /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA/size-profiles/size-profile_sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA-miRNA.txt
awk: cmd. line:2: (FILENAME=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA/size-profiles/size-profile_sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA-miRNA.txt FNR=1) fatal: division by zero attempted
+ join /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMPnorm.txt
+ mv /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP2.txt /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt
+ read NAME
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT/size-profiles/
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT/normalization.txt
++ cut -f 1
++ tail -n 1
++ tr ' ' '\t'
+ NORM=0
+ [[ Y == N ]]
+ awk -v 'OFS=\t' -v NORM=0 '{
          print $1,$2/NORM
        }' /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT/size-profiles/size-profile_sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT-miRNA.txt
awk: cmd. line:2: (FILENAME=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT/size-profiles/size-profile_sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT-miRNA.txt FNR=1) fatal: division by zero attempted
+ join /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMPnorm.txt
+ mv /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP2.txt /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt
+ read NAME
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG/size-profiles/
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG/normalization.txt
++ cut -f 1
++ tail -n 1
++ tr ' ' '\t'
+ NORM=0
+ [[ Y == N ]]
+ awk -v 'OFS=\t' -v NORM=0 '{
          print $1,$2/NORM
        }' /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG/size-profiles/size-profile_sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG-miRNA.txt
awk: cmd. line:2: (FILENAME=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG/size-profiles/size-profile_sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG-miRNA.txt FNR=1) fatal: division by zero attempted
+ join /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMPnorm.txt
+ mv /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP2.txt /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt
+ read NAME
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA/size-profiles/
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA/normalization.txt
++ cut -f 1
++ tr ' ' '\t'
++ tail -n 1
+ NORM=0
+ [[ Y == N ]]
+ awk -v 'OFS=\t' -v NORM=0 '{
          print $1,$2/NORM
        }' /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA/size-profiles/size-profile_sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA-miRNA.txt
awk: cmd. line:2: (FILENAME=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA/size-profiles/size-profile_sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA-miRNA.txt FNR=1) fatal: division by zero attempted
+ join /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMPnorm.txt
+ mv /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP2.txt /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt
+ read NAME
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT/size-profiles/
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT/normalization.txt
++ cut -f 1
++ tail -n 1
++ tr ' ' '\t'
+ NORM=0
+ [[ Y == N ]]
+ awk -v 'OFS=\t' -v NORM=0 '{
          print $1,$2/NORM
        }' /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT/size-profiles/size-profile_sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT-miRNA.txt
awk: cmd. line:2: (FILENAME=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT/size-profiles/size-profile_sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT-miRNA.txt FNR=1) fatal: division by zero attempted
+ join /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMPnorm.txt
+ mv /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP2.txt /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt
+ read NAME
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG/size-profiles/
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG/normalization.txt
++ cut -f 1
++ tail -n 1
++ tr ' ' '\t'
+ NORM=0
+ [[ Y == N ]]
+ awk -v 'OFS=\t' -v NORM=0 '{
          print $1,$2/NORM
        }' /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG/size-profiles/size-profile_sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG-miRNA.txt
awk: cmd. line:2: (FILENAME=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG/size-profiles/size-profile_sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG-miRNA.txt FNR=1) fatal: division by zero attempted
+ join /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMPnorm.txt
+ mv /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP2.txt /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt
+ read NAME
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG/size-profiles/
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG/normalization.txt
++ cut -f 1
++ tr ' ' '\t'
++ tail -n 1
+ NORM=0
+ [[ Y == N ]]
+ awk -v 'OFS=\t' -v NORM=0 '{
          print $1,$2/NORM
        }' /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG/size-profiles/size-profile_sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG-miRNA.txt
awk: cmd. line:2: (FILENAME=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG/size-profiles/size-profile_sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG-miRNA.txt FNR=1) fatal: division by zero attempted
+ join /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMPnorm.txt
+ mv /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP2.txt /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt
+ read NAME
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA/size-profiles/
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA/normalization.txt
++ tail -n 1
++ cut -f 1
++ tr ' ' '\t'
+ NORM=0
+ [[ Y == N ]]
+ awk -v 'OFS=\t' -v NORM=0 '{
          print $1,$2/NORM
        }' /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA/size-profiles/size-profile_sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA-miRNA.txt
awk: cmd. line:2: (FILENAME=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA/size-profiles/size-profile_sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA-miRNA.txt FNR=1) fatal: division by zero attempted
+ join /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMPnorm.txt
+ mv /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP2.txt /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt
+ read NAME
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA/size-profiles/
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA/normalization.txt
++ tail -n 1
++ cut -f 1
++ tr ' ' '\t'
+ NORM=0
+ [[ Y == N ]]
+ awk -v 'OFS=\t' -v NORM=0 '{
          print $1,$2/NORM
        }' /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA/size-profiles/size-profile_sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA-miRNA.txt
awk: cmd. line:2: (FILENAME=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA/size-profiles/size-profile_sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA-miRNA.txt FNR=1) fatal: division by zero attempted
+ join /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMPnorm.txt
+ mv /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP2.txt /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt
+ read NAME
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC/size-profiles/
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC/normalization.txt
++ cut -f 1
++ tr ' ' '\t'
++ tail -n 1
+ NORM=0
+ [[ Y == N ]]
+ awk -v 'OFS=\t' -v NORM=0 '{
          print $1,$2/NORM
        }' /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC/size-profiles/size-profile_sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC-miRNA.txt
awk: cmd. line:2: (FILENAME=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC/size-profiles/size-profile_sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC-miRNA.txt FNR=1) fatal: division by zero attempted
+ join /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMPnorm.txt
+ mv /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP2.txt /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt
+ read NAME
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA/size-profiles/
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA/normalization.txt
++ cut -f 1
++ tail -n 1
++ tr ' ' '\t'
+ NORM=0
+ [[ Y == N ]]
+ awk -v 'OFS=\t' -v NORM=0 '{
          print $1,$2/NORM
        }' /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA/size-profiles/size-profile_sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA-miRNA.txt
awk: cmd. line:2: (FILENAME=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA/size-profiles/size-profile_sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA-miRNA.txt FNR=1) fatal: division by zero attempted
+ join /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMPnorm.txt
+ mv /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP2.txt /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt
+ read NAME
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC/size-profiles/
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC/normalization.txt
++ cut -f 1
++ tr ' ' '\t'
++ tail -n 1
+ NORM=0
+ [[ Y == N ]]
+ awk -v 'OFS=\t' -v NORM=0 '{
          print $1,$2/NORM
        }' /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC/size-profiles/size-profile_sRNAseq_HsBam_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC-miRNA.txt
awk: cmd. line:2: (FILENAME=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC/size-profiles/size-profile_sRNAseq_HsBam_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC-miRNA.txt FNR=1) fatal: division by zero attempted
+ join /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMPnorm.txt
+ mv /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP2.txt /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt
+ read NAME
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repB_283080_sRBC_GTCAG/size-profiles/
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repB_283080_sRBC_GTCAG/normalization.txt
++ cut -f 1
++ tr ' ' '\t'
++ tail -n 1
+ NORM=0
+ [[ Y == N ]]
+ awk -v 'OFS=\t' -v NORM=0 '{
          print $1,$2/NORM
        }' /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repB_283080_sRBC_GTCAG/size-profiles/size-profile_sRNAseq_HsBam_ControlKD_00hAHS_repB_283080_sRBC_GTCAG-miRNA.txt
awk: cmd. line:2: (FILENAME=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repB_283080_sRBC_GTCAG/size-profiles/size-profile_sRNAseq_HsBam_ControlKD_00hAHS_repB_283080_sRBC_GTCAG-miRNA.txt FNR=1) fatal: division by zero attempted
+ join /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMPnorm.txt
+ mv /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP2.txt /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt
+ read NAME
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repC_283081_sRBC_CAGTG/size-profiles/
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repC_283081_sRBC_CAGTG/normalization.txt
++ cut -f 1
++ tr ' ' '\t'
++ tail -n 1
+ NORM=0
+ [[ Y == N ]]
+ awk -v 'OFS=\t' -v NORM=0 '{
          print $1,$2/NORM
        }' /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repC_283081_sRBC_CAGTG/size-profiles/size-profile_sRNAseq_HsBam_ControlKD_00hAHS_repC_283081_sRBC_CAGTG-miRNA.txt
awk: cmd. line:2: (FILENAME=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repC_283081_sRBC_CAGTG/size-profiles/size-profile_sRNAseq_HsBam_ControlKD_00hAHS_repC_283081_sRBC_CAGTG-miRNA.txt FNR=1) fatal: division by zero attempted
+ join /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMPnorm.txt
+ mv /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP2.txt /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt
+ read NAME
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repD_283082_sRBC_TGACT/size-profiles/
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repD_283082_sRBC_TGACT/normalization.txt
++ cut -f 1
++ tr ' ' '\t'
++ tail -n 1
+ NORM=0
+ [[ Y == N ]]
+ awk -v 'OFS=\t' -v NORM=0 '{
          print $1,$2/NORM
        }' /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repD_283082_sRBC_TGACT/size-profiles/size-profile_sRNAseq_HsBam_ControlKD_68hAHS_repD_283082_sRBC_TGACT-miRNA.txt
awk: cmd. line:2: (FILENAME=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repD_283082_sRBC_TGACT/size-profiles/size-profile_sRNAseq_HsBam_ControlKD_68hAHS_repD_283082_sRBC_TGACT-miRNA.txt FNR=1) fatal: division by zero attempted
+ join /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMPnorm.txt
+ mv /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP2.txt /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt
+ read NAME
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repB_283080_sRBC_ATGGA/size-profiles/
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repB_283080_sRBC_ATGGA/normalization.txt
++ cut -f 1
++ tail -n 1
++ tr ' ' '\t'
+ NORM=0
+ [[ Y == N ]]
+ awk -v 'OFS=\t' -v NORM=0 '{
          print $1,$2/NORM
        }' /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repB_283080_sRBC_ATGGA/size-profiles/size-profile_sRNAseq_HsBam_PiwiKD_68hAHS_repB_283080_sRBC_ATGGA-miRNA.txt
awk: cmd. line:2: (FILENAME=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repB_283080_sRBC_ATGGA/size-profiles/size-profile_sRNAseq_HsBam_PiwiKD_68hAHS_repB_283080_sRBC_ATGGA-miRNA.txt FNR=1) fatal: division by zero attempted
+ join /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMPnorm.txt
+ mv /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP2.txt /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt
+ read NAME
+ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repB_283080_sRBC_TGACT/size-profiles/
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repB_283080_sRBC_TGACT/normalization.txt
++ cut -f 1
++ tr ' ' '\t'
++ tail -n 1
+ NORM=0
+ [[ Y == N ]]
+ awk -v 'OFS=\t' -v NORM=0 '{
          print $1,$2/NORM
        }' /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repB_283080_sRBC_TGACT/size-profiles/size-profile_sRNAseq_HsBam_ControlKD_68hAHS_repB_283080_sRBC_TGACT-miRNA.txt
awk: cmd. line:2: (FILENAME=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repB_283080_sRBC_TGACT/size-profiles/size-profile_sRNAseq_HsBam_ControlKD_68hAHS_repB_283080_sRBC_TGACT-miRNA.txt FNR=1) fatal: division by zero attempted
+ join /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMPnorm.txt
+ mv /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP2.txt /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt
+ read NAME
+ echo length sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA sRNAseq_HsBam_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC sRNAseq_HsBam_ControlKD_00hAHS_repB_283080_sRBC_GTCAG sRNAseq_HsBam_ControlKD_00hAHS_repC_283081_sRBC_CAGTG sRNAseq_HsBam_ControlKD_68hAHS_repD_283082_sRBC_TGACT sRNAseq_HsBam_PiwiKD_68hAHS_repB_283080_sRBC_ATGGA sRNAseq_HsBam_ControlKD_68hAHS_repB_283080_sRBC_TGACT
+ tr ' ' '\t'
+ tr ' ' '\t'
+ sort -k1,1n /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt
+ Rscript /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/script-files/plot_compound-size-profile.R TMP=/faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/ CATEGORY=miRNA FOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/plots/raw-data/ PLOTdir=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/plots/size-profiles/
+ singularity exec --cleanenv -B /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/:/tmp /home/thomasgrnbk/AP_singu/R.simg Rscript /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/script-files/plot_compound-size-profile.R TMP=/faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/ CATEGORY=miRNA FOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/plots/raw-data/ PLOTdir=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/plots/size-profiles/

Attaching package: ‘plotly’

The following objects are masked from ‘package:plyr’:

    arrange, mutate, rename, summarise

The following object is masked from ‘package:ggplot2’:

    last_plot

The following object is masked from ‘package:stats’:

    filter

The following object is masked from ‘package:graphics’:

    layout

Warning message:
In min(FILLEdsizes$length) : no non-missing arguments to min; returning Inf
Warning message:
In max(FILLEdsizes$length) :
  no non-missing arguments to max; returning -Inf
Saving 7 x 7 in image
Saving 7 x 7 in image
Error: Faceting variables must have at least one value
Backtrace:
     █
  1. └─ggplot2::ggsave(outFILE, x)
  2.   ├─grid::grid.draw(plot)
  3.   └─ggplot2:::grid.draw.ggplot(plot)
  4.     ├─base::print(x)
  5.     └─ggplot2:::print.ggplot(x)
  6.       ├─ggplot2::ggplot_build(x)
  7.       └─ggplot2:::ggplot_build.ggplot(x)
  8.         └─layout$setup(data, plot$data, plot$plot_env)
  9.           └─ggplot2:::f(..., self = self)
 10.             └─self$facet$compute_layout(data, self$facet_params)
 11.               └─ggplot2:::f(...)
 12.                 ├─ggplot2:::unrowname(...)
 13.                 │ └─base::is.data.frame(x)
 14.                 └─ggplot2::combine_vars(data, params$plot_env, vars, drop = params$drop)
Execution halted
+ [[ sRNAseq == sRNAseq ]]
+ CATEGORIES='TE_RPKM_sense-salmon TE_RPKM_antisense-salmon TE_RPKM_sense-bowtie TE_RPKM_antisense-bowtie TE_counts_sense-bowtie TE_counts_antisense-bowtie'
+ [[ N == Y ]]
+ [[ sRNAseq == sRNAseq ]]
+ for CATEGORY in $CATEGORIES
+ [[ TE_RPKM_sense-salmon == *\T\E\_\G\e\T\M\M* ]]
+ [[ TE_RPKM_sense-salmon == GeTMM_gene ]]
+ NAMES=TE
+ awk -v 'OFS=\t' '{
        X[$1]=X[$1]"\t"$2
      }
      END {
        for (i in X) {
        print i,X[i]
        }
      }' /dev/fd/63
+ cut --complement -f 1
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG/
++ NAMES='TE sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG/TE_RPKM_sense-salmon.txt
+ awk -v 'OFS=\t' '{
          X=$1
          gsub("_AS","",X)
          print X,$0
        }'
+ sort -k1,1
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA/
++ NAMES='TE sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA/TE_RPKM_sense-salmon.txt
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT/
++ NAMES='TE sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT/TE_RPKM_sense-salmon.txt
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA/
++ NAMES='TE sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA/TE_RPKM_sense-salmon.txt
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT/
++ NAMES='TE sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT/TE_RPKM_sense-salmon.txt
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG/
++ NAMES='TE sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG/TE_RPKM_sense-salmon.txt
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA/
++ NAMES='TE sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA/TE_RPKM_sense-salmon.txt
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT/
++ NAMES='TE sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT/TE_RPKM_sense-salmon.txt
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG/
++ NAMES='TE sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG/TE_RPKM_sense-salmon.txt
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG/
++ NAMES='TE sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG/TE_RPKM_sense-salmon.txt
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA/
++ NAMES='TE sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA/TE_RPKM_sense-salmon.txt
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA/
++ NAMES='TE sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA/TE_RPKM_sense-salmon.txt
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC/
++ NAMES='TE sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC/TE_RPKM_sense-salmon.txt
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA/
++ NAMES='TE sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA/TE_RPKM_sense-salmon.txt
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC/
++ NAMES='TE sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA sRNAseq_HsBam_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC/TE_RPKM_sense-salmon.txt
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repB_283080_sRBC_GTCAG/
++ NAMES='TE sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA sRNAseq_HsBam_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC sRNAseq_HsBam_ControlKD_00hAHS_repB_283080_sRBC_GTCAG'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repB_283080_sRBC_GTCAG/TE_RPKM_sense-salmon.txt
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repC_283081_sRBC_CAGTG/
++ NAMES='TE sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA sRNAseq_HsBam_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC sRNAseq_HsBam_ControlKD_00hAHS_repB_283080_sRBC_GTCAG sRNAseq_HsBam_ControlKD_00hAHS_repC_283081_sRBC_CAGTG'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repC_283081_sRBC_CAGTG/TE_RPKM_sense-salmon.txt
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repD_283082_sRBC_TGACT/
++ NAMES='TE sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA sRNAseq_HsBam_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC sRNAseq_HsBam_ControlKD_00hAHS_repB_283080_sRBC_GTCAG sRNAseq_HsBam_ControlKD_00hAHS_repC_283081_sRBC_CAGTG sRNAseq_HsBam_ControlKD_68hAHS_repD_283082_sRBC_TGACT'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repD_283082_sRBC_TGACT/TE_RPKM_sense-salmon.txt
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repB_283080_sRBC_ATGGA/
++ NAMES='TE sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA sRNAseq_HsBam_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC sRNAseq_HsBam_ControlKD_00hAHS_repB_283080_sRBC_GTCAG sRNAseq_HsBam_ControlKD_00hAHS_repC_283081_sRBC_CAGTG sRNAseq_HsBam_ControlKD_68hAHS_repD_283082_sRBC_TGACT sRNAseq_HsBam_PiwiKD_68hAHS_repB_283080_sRBC_ATGGA'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repB_283080_sRBC_ATGGA/TE_RPKM_sense-salmon.txt
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repB_283080_sRBC_TGACT/
++ NAMES='TE sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA sRNAseq_HsBam_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC sRNAseq_HsBam_ControlKD_00hAHS_repB_283080_sRBC_GTCAG sRNAseq_HsBam_ControlKD_00hAHS_repC_283081_sRBC_CAGTG sRNAseq_HsBam_ControlKD_68hAHS_repD_283082_sRBC_TGACT sRNAseq_HsBam_PiwiKD_68hAHS_repB_283080_sRBC_ATGGA sRNAseq_HsBam_ControlKD_68hAHS_repB_283080_sRBC_TGACT'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repB_283080_sRBC_TGACT/TE_RPKM_sense-salmon.txt
++ read NAME
++ echo TE sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA sRNAseq_HsBam_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC sRNAseq_HsBam_ControlKD_00hAHS_repB_283080_sRBC_GTCAG sRNAseq_HsBam_ControlKD_00hAHS_repC_283081_sRBC_CAGTG sRNAseq_HsBam_ControlKD_68hAHS_repD_283082_sRBC_TGACT sRNAseq_HsBam_PiwiKD_68hAHS_repB_283080_sRBC_ATGGA sRNAseq_HsBam_ControlKD_68hAHS_repB_283080_sRBC_TGACT
++ tr ' ' '\t'
+ cat /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt
+ tr -s '\t'
+ sed 's/::/\t/g'
+ tr ' ' '\t'
+ for CATEGORY in $CATEGORIES
+ [[ TE_RPKM_antisense-salmon == *\T\E\_\G\e\T\M\M* ]]
+ [[ TE_RPKM_antisense-salmon == GeTMM_gene ]]
+ NAMES=TE
+ awk -v 'OFS=\t' '{
        X[$1]=X[$1]"\t"$2
      }
      END {
        for (i in X) {
        print i,X[i]
        }
      }' /dev/fd/63
++ read NAME
+ awk -v 'OFS=\t' '{
          X=$1
          gsub("_AS","",X)
          print X,$0
        }'
+ sort -k1,1
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG/
++ NAMES='TE sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG'
+ cut --complement -f 1
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG/TE_RPKM_antisense-salmon.txt
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA/
++ NAMES='TE sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA/TE_RPKM_antisense-salmon.txt
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT/
++ NAMES='TE sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT/TE_RPKM_antisense-salmon.txt
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA/
++ NAMES='TE sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA/TE_RPKM_antisense-salmon.txt
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT/
++ NAMES='TE sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT/TE_RPKM_antisense-salmon.txt
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG/
++ NAMES='TE sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG/TE_RPKM_antisense-salmon.txt
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA/
++ NAMES='TE sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA/TE_RPKM_antisense-salmon.txt
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT/
++ NAMES='TE sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT/TE_RPKM_antisense-salmon.txt
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG/
++ NAMES='TE sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG/TE_RPKM_antisense-salmon.txt
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG/
++ NAMES='TE sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG/TE_RPKM_antisense-salmon.txt
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA/
++ NAMES='TE sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA/TE_RPKM_antisense-salmon.txt
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA/
++ NAMES='TE sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA/TE_RPKM_antisense-salmon.txt
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC/
++ NAMES='TE sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC/TE_RPKM_antisense-salmon.txt
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA/
++ NAMES='TE sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA/TE_RPKM_antisense-salmon.txt
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC/
++ NAMES='TE sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA sRNAseq_HsBam_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC/TE_RPKM_antisense-salmon.txt
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repB_283080_sRBC_GTCAG/
++ NAMES='TE sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA sRNAseq_HsBam_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC sRNAseq_HsBam_ControlKD_00hAHS_repB_283080_sRBC_GTCAG'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repB_283080_sRBC_GTCAG/TE_RPKM_antisense-salmon.txt
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repC_283081_sRBC_CAGTG/
++ NAMES='TE sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA sRNAseq_HsBam_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC sRNAseq_HsBam_ControlKD_00hAHS_repB_283080_sRBC_GTCAG sRNAseq_HsBam_ControlKD_00hAHS_repC_283081_sRBC_CAGTG'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repC_283081_sRBC_CAGTG/TE_RPKM_antisense-salmon.txt
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repD_283082_sRBC_TGACT/
++ NAMES='TE sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA sRNAseq_HsBam_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC sRNAseq_HsBam_ControlKD_00hAHS_repB_283080_sRBC_GTCAG sRNAseq_HsBam_ControlKD_00hAHS_repC_283081_sRBC_CAGTG sRNAseq_HsBam_ControlKD_68hAHS_repD_283082_sRBC_TGACT'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repD_283082_sRBC_TGACT/TE_RPKM_antisense-salmon.txt
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repB_283080_sRBC_ATGGA/
++ NAMES='TE sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA sRNAseq_HsBam_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC sRNAseq_HsBam_ControlKD_00hAHS_repB_283080_sRBC_GTCAG sRNAseq_HsBam_ControlKD_00hAHS_repC_283081_sRBC_CAGTG sRNAseq_HsBam_ControlKD_68hAHS_repD_283082_sRBC_TGACT sRNAseq_HsBam_PiwiKD_68hAHS_repB_283080_sRBC_ATGGA'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repB_283080_sRBC_ATGGA/TE_RPKM_antisense-salmon.txt
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repB_283080_sRBC_TGACT/
++ NAMES='TE sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA sRNAseq_HsBam_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC sRNAseq_HsBam_ControlKD_00hAHS_repB_283080_sRBC_GTCAG sRNAseq_HsBam_ControlKD_00hAHS_repC_283081_sRBC_CAGTG sRNAseq_HsBam_ControlKD_68hAHS_repD_283082_sRBC_TGACT sRNAseq_HsBam_PiwiKD_68hAHS_repB_283080_sRBC_ATGGA sRNAseq_HsBam_ControlKD_68hAHS_repB_283080_sRBC_TGACT'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repB_283080_sRBC_TGACT/TE_RPKM_antisense-salmon.txt
++ read NAME
++ tr ' ' '\t'
++ echo TE sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA sRNAseq_HsBam_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC sRNAseq_HsBam_ControlKD_00hAHS_repB_283080_sRBC_GTCAG sRNAseq_HsBam_ControlKD_00hAHS_repC_283081_sRBC_CAGTG sRNAseq_HsBam_ControlKD_68hAHS_repD_283082_sRBC_TGACT sRNAseq_HsBam_PiwiKD_68hAHS_repB_283080_sRBC_ATGGA sRNAseq_HsBam_ControlKD_68hAHS_repB_283080_sRBC_TGACT
+ tr -s '\t'
+ tr ' ' '\t'
+ sed 's/::/\t/g'
+ cat /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt
+ for CATEGORY in $CATEGORIES
+ [[ TE_RPKM_sense-bowtie == *\T\E\_\G\e\T\M\M* ]]
+ [[ TE_RPKM_sense-bowtie == GeTMM_gene ]]
+ NAMES=TE
+ cut --complement -f 1
+ sort -k1,1
+ awk -v 'OFS=\t' '{
          X=$1
          gsub("_AS","",X)
          print X,$0
        }'
+ awk -v 'OFS=\t' '{
        X[$1]=X[$1]"\t"$2
      }
      END {
        for (i in X) {
        print i,X[i]
        }
      }' /dev/fd/63
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG/
++ NAMES='TE sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG/TE_RPKM_sense-bowtie.txt
cat: /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG/TE_RPKM_sense-bowtie.txt: No such file or directory
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA/
++ NAMES='TE sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA/TE_RPKM_sense-bowtie.txt
cat: /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA/TE_RPKM_sense-bowtie.txt: No such file or directory
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT/
++ NAMES='TE sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT/TE_RPKM_sense-bowtie.txt
cat: /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT/TE_RPKM_sense-bowtie.txt: No such file or directory
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA/
++ NAMES='TE sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA/TE_RPKM_sense-bowtie.txt
cat: /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA/TE_RPKM_sense-bowtie.txt: No such file or directory
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT/
++ NAMES='TE sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT/TE_RPKM_sense-bowtie.txt
cat: /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT/TE_RPKM_sense-bowtie.txt: No such file or directory
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG/
++ NAMES='TE sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG/TE_RPKM_sense-bowtie.txt
cat: /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG/TE_RPKM_sense-bowtie.txt: No such file or directory
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA/
++ NAMES='TE sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA/TE_RPKM_sense-bowtie.txt
cat: /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA/TE_RPKM_sense-bowtie.txt: No such file or directory
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT/
++ NAMES='TE sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT/TE_RPKM_sense-bowtie.txt
cat: /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT/TE_RPKM_sense-bowtie.txt: No such file or directory
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG/
++ NAMES='TE sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG/TE_RPKM_sense-bowtie.txt
cat: /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG/TE_RPKM_sense-bowtie.txt: No such file or directory
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG/
++ NAMES='TE sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG/TE_RPKM_sense-bowtie.txt
cat: /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG/TE_RPKM_sense-bowtie.txt: No such file or directory
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA/
++ NAMES='TE sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA/TE_RPKM_sense-bowtie.txt
cat: /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA/TE_RPKM_sense-bowtie.txt: No such file or directory
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA/
++ NAMES='TE sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA/TE_RPKM_sense-bowtie.txt
cat: /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA/TE_RPKM_sense-bowtie.txt: No such file or directory
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC/
++ NAMES='TE sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC/TE_RPKM_sense-bowtie.txt
cat: /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC/TE_RPKM_sense-bowtie.txt: No such file or directory
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA/
++ NAMES='TE sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA/TE_RPKM_sense-bowtie.txt
cat: /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA/TE_RPKM_sense-bowtie.txt: No such file or directory
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC/
++ NAMES='TE sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA sRNAseq_HsBam_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC/TE_RPKM_sense-bowtie.txt
cat: /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC/TE_RPKM_sense-bowtie.txt: No such file or directory
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repB_283080_sRBC_GTCAG/
++ NAMES='TE sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA sRNAseq_HsBam_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC sRNAseq_HsBam_ControlKD_00hAHS_repB_283080_sRBC_GTCAG'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repB_283080_sRBC_GTCAG/TE_RPKM_sense-bowtie.txt
cat: /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repB_283080_sRBC_GTCAG/TE_RPKM_sense-bowtie.txt: No such file or directory
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repC_283081_sRBC_CAGTG/
++ NAMES='TE sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA sRNAseq_HsBam_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC sRNAseq_HsBam_ControlKD_00hAHS_repB_283080_sRBC_GTCAG sRNAseq_HsBam_ControlKD_00hAHS_repC_283081_sRBC_CAGTG'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repC_283081_sRBC_CAGTG/TE_RPKM_sense-bowtie.txt
cat: /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repC_283081_sRBC_CAGTG/TE_RPKM_sense-bowtie.txt: No such file or directory
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repD_283082_sRBC_TGACT/
++ NAMES='TE sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA sRNAseq_HsBam_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC sRNAseq_HsBam_ControlKD_00hAHS_repB_283080_sRBC_GTCAG sRNAseq_HsBam_ControlKD_00hAHS_repC_283081_sRBC_CAGTG sRNAseq_HsBam_ControlKD_68hAHS_repD_283082_sRBC_TGACT'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repD_283082_sRBC_TGACT/TE_RPKM_sense-bowtie.txt
cat: /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repD_283082_sRBC_TGACT/TE_RPKM_sense-bowtie.txt: No such file or directory
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repB_283080_sRBC_ATGGA/
++ NAMES='TE sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA sRNAseq_HsBam_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC sRNAseq_HsBam_ControlKD_00hAHS_repB_283080_sRBC_GTCAG sRNAseq_HsBam_ControlKD_00hAHS_repC_283081_sRBC_CAGTG sRNAseq_HsBam_ControlKD_68hAHS_repD_283082_sRBC_TGACT sRNAseq_HsBam_PiwiKD_68hAHS_repB_283080_sRBC_ATGGA'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repB_283080_sRBC_ATGGA/TE_RPKM_sense-bowtie.txt
cat: /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repB_283080_sRBC_ATGGA/TE_RPKM_sense-bowtie.txt: No such file or directory
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repB_283080_sRBC_TGACT/
++ NAMES='TE sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA sRNAseq_HsBam_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC sRNAseq_HsBam_ControlKD_00hAHS_repB_283080_sRBC_GTCAG sRNAseq_HsBam_ControlKD_00hAHS_repC_283081_sRBC_CAGTG sRNAseq_HsBam_ControlKD_68hAHS_repD_283082_sRBC_TGACT sRNAseq_HsBam_PiwiKD_68hAHS_repB_283080_sRBC_ATGGA sRNAseq_HsBam_ControlKD_68hAHS_repB_283080_sRBC_TGACT'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repB_283080_sRBC_TGACT/TE_RPKM_sense-bowtie.txt
cat: /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repB_283080_sRBC_TGACT/TE_RPKM_sense-bowtie.txt: No such file or directory
++ read NAME
++ echo TE sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA sRNAseq_HsBam_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC sRNAseq_HsBam_ControlKD_00hAHS_repB_283080_sRBC_GTCAG sRNAseq_HsBam_ControlKD_00hAHS_repC_283081_sRBC_CAGTG sRNAseq_HsBam_ControlKD_68hAHS_repD_283082_sRBC_TGACT sRNAseq_HsBam_PiwiKD_68hAHS_repB_283080_sRBC_ATGGA sRNAseq_HsBam_ControlKD_68hAHS_repB_283080_sRBC_TGACT
++ tr ' ' '\t'
+ cat /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt
+ tr -s '\t'
+ tr ' ' '\t'
+ sed 's/::/\t/g'
+ for CATEGORY in $CATEGORIES
+ [[ TE_RPKM_antisense-bowtie == *\T\E\_\G\e\T\M\M* ]]
+ [[ TE_RPKM_antisense-bowtie == GeTMM_gene ]]
+ NAMES=TE
+ awk -v 'OFS=\t' '{
        X[$1]=X[$1]"\t"$2
      }
      END {
        for (i in X) {
        print i,X[i]
        }
      }' /dev/fd/63
+ cut --complement -f 1
+ awk -v 'OFS=\t' '{
          X=$1
          gsub("_AS","",X)
          print X,$0
++ read NAME
+ sort -k1,1
        }'
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG/
++ NAMES='TE sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG/TE_RPKM_antisense-bowtie.txt
cat: /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG/TE_RPKM_antisense-bowtie.txt: No such file or directory
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA/
++ NAMES='TE sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA/TE_RPKM_antisense-bowtie.txt
cat: /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA/TE_RPKM_antisense-bowtie.txt: No such file or directory
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT/
++ NAMES='TE sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT/TE_RPKM_antisense-bowtie.txt
cat: /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT/TE_RPKM_antisense-bowtie.txt: No such file or directory
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA/
++ NAMES='TE sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA/TE_RPKM_antisense-bowtie.txt
cat: /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA/TE_RPKM_antisense-bowtie.txt: No such file or directory
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT/
++ NAMES='TE sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT/TE_RPKM_antisense-bowtie.txt
cat: /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT/TE_RPKM_antisense-bowtie.txt: No such file or directory
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG/
++ NAMES='TE sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG/TE_RPKM_antisense-bowtie.txt
cat: /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG/TE_RPKM_antisense-bowtie.txt: No such file or directory
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA/
++ NAMES='TE sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA/TE_RPKM_antisense-bowtie.txt
cat: /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA/TE_RPKM_antisense-bowtie.txt: No such file or directory
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT/
++ NAMES='TE sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT/TE_RPKM_antisense-bowtie.txt
cat: /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT/TE_RPKM_antisense-bowtie.txt: No such file or directory
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG/
++ NAMES='TE sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG/TE_RPKM_antisense-bowtie.txt
cat: /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG/TE_RPKM_antisense-bowtie.txt: No such file or directory
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG/
++ NAMES='TE sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG/TE_RPKM_antisense-bowtie.txt
cat: /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG/TE_RPKM_antisense-bowtie.txt: No such file or directory
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA/
++ NAMES='TE sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA/TE_RPKM_antisense-bowtie.txt
cat: /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA/TE_RPKM_antisense-bowtie.txt: No such file or directory
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA/
++ NAMES='TE sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA/TE_RPKM_antisense-bowtie.txt
cat: /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA/TE_RPKM_antisense-bowtie.txt: No such file or directory
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC/
++ NAMES='TE sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC/TE_RPKM_antisense-bowtie.txt
cat: /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC/TE_RPKM_antisense-bowtie.txt: No such file or directory
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA/
++ NAMES='TE sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA/TE_RPKM_antisense-bowtie.txt
cat: /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA/TE_RPKM_antisense-bowtie.txt: No such file or directory
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC/
++ NAMES='TE sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA sRNAseq_HsBam_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC/TE_RPKM_antisense-bowtie.txt
cat: /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC/TE_RPKM_antisense-bowtie.txt: No such file or directory
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repB_283080_sRBC_GTCAG/
++ NAMES='TE sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA sRNAseq_HsBam_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC sRNAseq_HsBam_ControlKD_00hAHS_repB_283080_sRBC_GTCAG'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repB_283080_sRBC_GTCAG/TE_RPKM_antisense-bowtie.txt
cat: /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repB_283080_sRBC_GTCAG/TE_RPKM_antisense-bowtie.txt: No such file or directory
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repC_283081_sRBC_CAGTG/
++ NAMES='TE sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA sRNAseq_HsBam_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC sRNAseq_HsBam_ControlKD_00hAHS_repB_283080_sRBC_GTCAG sRNAseq_HsBam_ControlKD_00hAHS_repC_283081_sRBC_CAGTG'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repC_283081_sRBC_CAGTG/TE_RPKM_antisense-bowtie.txt
cat: /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repC_283081_sRBC_CAGTG/TE_RPKM_antisense-bowtie.txt: No such file or directory
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repD_283082_sRBC_TGACT/
++ NAMES='TE sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA sRNAseq_HsBam_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC sRNAseq_HsBam_ControlKD_00hAHS_repB_283080_sRBC_GTCAG sRNAseq_HsBam_ControlKD_00hAHS_repC_283081_sRBC_CAGTG sRNAseq_HsBam_ControlKD_68hAHS_repD_283082_sRBC_TGACT'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repD_283082_sRBC_TGACT/TE_RPKM_antisense-bowtie.txt
cat: /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repD_283082_sRBC_TGACT/TE_RPKM_antisense-bowtie.txt: No such file or directory
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repB_283080_sRBC_ATGGA/
++ NAMES='TE sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA sRNAseq_HsBam_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC sRNAseq_HsBam_ControlKD_00hAHS_repB_283080_sRBC_GTCAG sRNAseq_HsBam_ControlKD_00hAHS_repC_283081_sRBC_CAGTG sRNAseq_HsBam_ControlKD_68hAHS_repD_283082_sRBC_TGACT sRNAseq_HsBam_PiwiKD_68hAHS_repB_283080_sRBC_ATGGA'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repB_283080_sRBC_ATGGA/TE_RPKM_antisense-bowtie.txt
cat: /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repB_283080_sRBC_ATGGA/TE_RPKM_antisense-bowtie.txt: No such file or directory
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repB_283080_sRBC_TGACT/
++ NAMES='TE sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA sRNAseq_HsBam_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC sRNAseq_HsBam_ControlKD_00hAHS_repB_283080_sRBC_GTCAG sRNAseq_HsBam_ControlKD_00hAHS_repC_283081_sRBC_CAGTG sRNAseq_HsBam_ControlKD_68hAHS_repD_283082_sRBC_TGACT sRNAseq_HsBam_PiwiKD_68hAHS_repB_283080_sRBC_ATGGA sRNAseq_HsBam_ControlKD_68hAHS_repB_283080_sRBC_TGACT'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repB_283080_sRBC_TGACT/TE_RPKM_antisense-bowtie.txt
cat: /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repB_283080_sRBC_TGACT/TE_RPKM_antisense-bowtie.txt: No such file or directory
++ read NAME
++ echo TE sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA sRNAseq_HsBam_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC sRNAseq_HsBam_ControlKD_00hAHS_repB_283080_sRBC_GTCAG sRNAseq_HsBam_ControlKD_00hAHS_repC_283081_sRBC_CAGTG sRNAseq_HsBam_ControlKD_68hAHS_repD_283082_sRBC_TGACT sRNAseq_HsBam_PiwiKD_68hAHS_repB_283080_sRBC_ATGGA sRNAseq_HsBam_ControlKD_68hAHS_repB_283080_sRBC_TGACT
++ tr ' ' '\t'
+ cat /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt
+ tr -s '\t'
+ tr ' ' '\t'
+ sed 's/::/\t/g'
+ for CATEGORY in $CATEGORIES
+ [[ TE_counts_sense-bowtie == *\T\E\_\G\e\T\M\M* ]]
+ [[ TE_counts_sense-bowtie == GeTMM_gene ]]
+ NAMES=TE
+ awk -v 'OFS=\t' '{
        X[$1]=X[$1]"\t"$2
      }
      END {
        for (i in X) {
        print i,X[i]
        }
      }' /dev/fd/63
+ cut --complement -f 1
+ sort -k1,1
++ read NAME
+ awk -v 'OFS=\t' '{
          X=$1
          gsub("_AS","",X)
          print X,$0
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG/
        }'
++ NAMES='TE sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG/TE_counts_sense-bowtie.txt
cat: /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG/TE_counts_sense-bowtie.txt: No such file or directory
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA/
++ NAMES='TE sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA/TE_counts_sense-bowtie.txt
cat: /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA/TE_counts_sense-bowtie.txt: No such file or directory
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT/
++ NAMES='TE sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT/TE_counts_sense-bowtie.txt
cat: /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT/TE_counts_sense-bowtie.txt: No such file or directory
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA/
++ NAMES='TE sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA/TE_counts_sense-bowtie.txt
cat: /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA/TE_counts_sense-bowtie.txt: No such file or directory
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT/
++ NAMES='TE sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT/TE_counts_sense-bowtie.txt
cat: /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT/TE_counts_sense-bowtie.txt: No such file or directory
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG/
++ NAMES='TE sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG/TE_counts_sense-bowtie.txt
cat: /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG/TE_counts_sense-bowtie.txt: No such file or directory
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA/
++ NAMES='TE sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA/TE_counts_sense-bowtie.txt
cat: /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA/TE_counts_sense-bowtie.txt: No such file or directory
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT/
++ NAMES='TE sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT/TE_counts_sense-bowtie.txt
cat: /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT/TE_counts_sense-bowtie.txt: No such file or directory
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG/
++ NAMES='TE sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG/TE_counts_sense-bowtie.txt
cat: /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG/TE_counts_sense-bowtie.txt: No such file or directory
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG/
++ NAMES='TE sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG/TE_counts_sense-bowtie.txt
cat: /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG/TE_counts_sense-bowtie.txt: No such file or directory
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA/
++ NAMES='TE sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA/TE_counts_sense-bowtie.txt
cat: /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA/TE_counts_sense-bowtie.txt: No such file or directory
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA/
++ NAMES='TE sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA/TE_counts_sense-bowtie.txt
cat: /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA/TE_counts_sense-bowtie.txt: No such file or directory
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC/
++ NAMES='TE sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC/TE_counts_sense-bowtie.txt
cat: /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC/TE_counts_sense-bowtie.txt: No such file or directory
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA/
++ NAMES='TE sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA/TE_counts_sense-bowtie.txt
cat: /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA/TE_counts_sense-bowtie.txt: No such file or directory
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC/
++ NAMES='TE sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA sRNAseq_HsBam_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC/TE_counts_sense-bowtie.txt
cat: /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC/TE_counts_sense-bowtie.txt: No such file or directory
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repB_283080_sRBC_GTCAG/
++ NAMES='TE sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA sRNAseq_HsBam_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC sRNAseq_HsBam_ControlKD_00hAHS_repB_283080_sRBC_GTCAG'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repB_283080_sRBC_GTCAG/TE_counts_sense-bowtie.txt
cat: /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repB_283080_sRBC_GTCAG/TE_counts_sense-bowtie.txt: No such file or directory
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repC_283081_sRBC_CAGTG/
++ NAMES='TE sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA sRNAseq_HsBam_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC sRNAseq_HsBam_ControlKD_00hAHS_repB_283080_sRBC_GTCAG sRNAseq_HsBam_ControlKD_00hAHS_repC_283081_sRBC_CAGTG'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repC_283081_sRBC_CAGTG/TE_counts_sense-bowtie.txt
cat: /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repC_283081_sRBC_CAGTG/TE_counts_sense-bowtie.txt: No such file or directory
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repD_283082_sRBC_TGACT/
++ NAMES='TE sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA sRNAseq_HsBam_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC sRNAseq_HsBam_ControlKD_00hAHS_repB_283080_sRBC_GTCAG sRNAseq_HsBam_ControlKD_00hAHS_repC_283081_sRBC_CAGTG sRNAseq_HsBam_ControlKD_68hAHS_repD_283082_sRBC_TGACT'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repD_283082_sRBC_TGACT/TE_counts_sense-bowtie.txt
cat: /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repD_283082_sRBC_TGACT/TE_counts_sense-bowtie.txt: No such file or directory
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repB_283080_sRBC_ATGGA/
++ NAMES='TE sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA sRNAseq_HsBam_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC sRNAseq_HsBam_ControlKD_00hAHS_repB_283080_sRBC_GTCAG sRNAseq_HsBam_ControlKD_00hAHS_repC_283081_sRBC_CAGTG sRNAseq_HsBam_ControlKD_68hAHS_repD_283082_sRBC_TGACT sRNAseq_HsBam_PiwiKD_68hAHS_repB_283080_sRBC_ATGGA'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repB_283080_sRBC_ATGGA/TE_counts_sense-bowtie.txt
cat: /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repB_283080_sRBC_ATGGA/TE_counts_sense-bowtie.txt: No such file or directory
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repB_283080_sRBC_TGACT/
++ NAMES='TE sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA sRNAseq_HsBam_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC sRNAseq_HsBam_ControlKD_00hAHS_repB_283080_sRBC_GTCAG sRNAseq_HsBam_ControlKD_00hAHS_repC_283081_sRBC_CAGTG sRNAseq_HsBam_ControlKD_68hAHS_repD_283082_sRBC_TGACT sRNAseq_HsBam_PiwiKD_68hAHS_repB_283080_sRBC_ATGGA sRNAseq_HsBam_ControlKD_68hAHS_repB_283080_sRBC_TGACT'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repB_283080_sRBC_TGACT/TE_counts_sense-bowtie.txt
cat: /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repB_283080_sRBC_TGACT/TE_counts_sense-bowtie.txt: No such file or directory
++ read NAME
++ echo TE sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA sRNAseq_HsBam_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC sRNAseq_HsBam_ControlKD_00hAHS_repB_283080_sRBC_GTCAG sRNAseq_HsBam_ControlKD_00hAHS_repC_283081_sRBC_CAGTG sRNAseq_HsBam_ControlKD_68hAHS_repD_283082_sRBC_TGACT sRNAseq_HsBam_PiwiKD_68hAHS_repB_283080_sRBC_ATGGA sRNAseq_HsBam_ControlKD_68hAHS_repB_283080_sRBC_TGACT
++ tr ' ' '\t'
+ cat /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt
+ tr -s '\t'
+ tr ' ' '\t'
+ sed 's/::/\t/g'
+ for CATEGORY in $CATEGORIES
+ [[ TE_counts_antisense-bowtie == *\T\E\_\G\e\T\M\M* ]]
+ [[ TE_counts_antisense-bowtie == GeTMM_gene ]]
+ NAMES=TE
+ awk -v 'OFS=\t' '{
        X[$1]=X[$1]"\t"$2
      }
      END {
        for (i in X) {
        print i,X[i]
        }
      }' /dev/fd/63
+ sort -k1,1
+ cut --complement -f 1
+ awk -v 'OFS=\t' '{
          X=$1
          gsub("_AS","",X)
          print X,$0
        }'
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG/
++ NAMES='TE sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG/TE_counts_antisense-bowtie.txt
cat: /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG/TE_counts_antisense-bowtie.txt: No such file or directory
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA/
++ NAMES='TE sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA/TE_counts_antisense-bowtie.txt
cat: /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA/TE_counts_antisense-bowtie.txt: No such file or directory
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT/
++ NAMES='TE sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT/TE_counts_antisense-bowtie.txt
cat: /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT/TE_counts_antisense-bowtie.txt: No such file or directory
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA/
++ NAMES='TE sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA/TE_counts_antisense-bowtie.txt
cat: /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA/TE_counts_antisense-bowtie.txt: No such file or directory
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT/
++ NAMES='TE sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT/TE_counts_antisense-bowtie.txt
cat: /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT/TE_counts_antisense-bowtie.txt: No such file or directory
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG/
++ NAMES='TE sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG/TE_counts_antisense-bowtie.txt
cat: /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG/TE_counts_antisense-bowtie.txt: No such file or directory
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA/
++ NAMES='TE sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA/TE_counts_antisense-bowtie.txt
cat: /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA/TE_counts_antisense-bowtie.txt: No such file or directory
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT/
++ NAMES='TE sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT/TE_counts_antisense-bowtie.txt
cat: /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT/TE_counts_antisense-bowtie.txt: No such file or directory
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG/
++ NAMES='TE sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG/TE_counts_antisense-bowtie.txt
cat: /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG/TE_counts_antisense-bowtie.txt: No such file or directory
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG/
++ NAMES='TE sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG/TE_counts_antisense-bowtie.txt
cat: /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG/TE_counts_antisense-bowtie.txt: No such file or directory
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA/
++ NAMES='TE sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA/TE_counts_antisense-bowtie.txt
cat: /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA/TE_counts_antisense-bowtie.txt: No such file or directory
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA/
++ NAMES='TE sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA/TE_counts_antisense-bowtie.txt
cat: /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA/TE_counts_antisense-bowtie.txt: No such file or directory
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC/
++ NAMES='TE sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC/TE_counts_antisense-bowtie.txt
cat: /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC/TE_counts_antisense-bowtie.txt: No such file or directory
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA/
++ NAMES='TE sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA/TE_counts_antisense-bowtie.txt
cat: /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA/TE_counts_antisense-bowtie.txt: No such file or directory
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC/
++ NAMES='TE sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA sRNAseq_HsBam_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC/TE_counts_antisense-bowtie.txt
cat: /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC/TE_counts_antisense-bowtie.txt: No such file or directory
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repB_283080_sRBC_GTCAG/
++ NAMES='TE sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA sRNAseq_HsBam_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC sRNAseq_HsBam_ControlKD_00hAHS_repB_283080_sRBC_GTCAG'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repB_283080_sRBC_GTCAG/TE_counts_antisense-bowtie.txt
cat: /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repB_283080_sRBC_GTCAG/TE_counts_antisense-bowtie.txt: No such file or directory
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repC_283081_sRBC_CAGTG/
++ NAMES='TE sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA sRNAseq_HsBam_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC sRNAseq_HsBam_ControlKD_00hAHS_repB_283080_sRBC_GTCAG sRNAseq_HsBam_ControlKD_00hAHS_repC_283081_sRBC_CAGTG'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repC_283081_sRBC_CAGTG/TE_counts_antisense-bowtie.txt
cat: /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repC_283081_sRBC_CAGTG/TE_counts_antisense-bowtie.txt: No such file or directory
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repD_283082_sRBC_TGACT/
++ NAMES='TE sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA sRNAseq_HsBam_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC sRNAseq_HsBam_ControlKD_00hAHS_repB_283080_sRBC_GTCAG sRNAseq_HsBam_ControlKD_00hAHS_repC_283081_sRBC_CAGTG sRNAseq_HsBam_ControlKD_68hAHS_repD_283082_sRBC_TGACT'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repD_283082_sRBC_TGACT/TE_counts_antisense-bowtie.txt
cat: /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repD_283082_sRBC_TGACT/TE_counts_antisense-bowtie.txt: No such file or directory
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repB_283080_sRBC_ATGGA/
++ NAMES='TE sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA sRNAseq_HsBam_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC sRNAseq_HsBam_ControlKD_00hAHS_repB_283080_sRBC_GTCAG sRNAseq_HsBam_ControlKD_00hAHS_repC_283081_sRBC_CAGTG sRNAseq_HsBam_ControlKD_68hAHS_repD_283082_sRBC_TGACT sRNAseq_HsBam_PiwiKD_68hAHS_repB_283080_sRBC_ATGGA'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repB_283080_sRBC_ATGGA/TE_counts_antisense-bowtie.txt
cat: /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repB_283080_sRBC_ATGGA/TE_counts_antisense-bowtie.txt: No such file or directory
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repB_283080_sRBC_TGACT/
++ NAMES='TE sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA sRNAseq_HsBam_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC sRNAseq_HsBam_ControlKD_00hAHS_repB_283080_sRBC_GTCAG sRNAseq_HsBam_ControlKD_00hAHS_repC_283081_sRBC_CAGTG sRNAseq_HsBam_ControlKD_68hAHS_repD_283082_sRBC_TGACT sRNAseq_HsBam_PiwiKD_68hAHS_repB_283080_sRBC_ATGGA sRNAseq_HsBam_ControlKD_68hAHS_repB_283080_sRBC_TGACT'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repB_283080_sRBC_TGACT/TE_counts_antisense-bowtie.txt
cat: /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repB_283080_sRBC_TGACT/TE_counts_antisense-bowtie.txt: No such file or directory
++ read NAME
++ echo TE sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA sRNAseq_HsBam_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC sRNAseq_HsBam_ControlKD_00hAHS_repB_283080_sRBC_GTCAG sRNAseq_HsBam_ControlKD_00hAHS_repC_283081_sRBC_CAGTG sRNAseq_HsBam_ControlKD_68hAHS_repD_283082_sRBC_TGACT sRNAseq_HsBam_PiwiKD_68hAHS_repB_283080_sRBC_ATGGA sRNAseq_HsBam_ControlKD_68hAHS_repB_283080_sRBC_TGACT
++ tr ' ' '\t'
+ cat /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP.txt
+ tr -s '\t'
+ tr ' ' '\t'
+ sed 's/::/\t/g'
+ [[ N == Y ]]
+ [[ sRNAseq == CHIPseq ]]
+ [[ sRNAseq == DNAseq ]]
+ [[ '' == Y ]]
+ CATEGORIES='sense antisense'
+ for CATEGORY in $CATEGORIES
+ NAMES=
+ awk -v 'OFS=\t' '{
        
        NAME=$1"~"$2
        if(NAME in X) {
          X[NAME]=X[NAME]"\t"$3
        }else{
          X[NAME]=$3
        }
      }
      END {
        for (i in X) {
          print i,X[i]
        }
      }' /dev/fd/63
+ sort -k2,2n
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG/
++ NAMES=' sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG/sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG_TE-sense_man.bg
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA/
++ NAMES=' sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA/sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA_TE-sense_man.bg
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT/
++ NAMES=' sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT/sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT_TE-sense_man.bg
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA/
++ NAMES=' sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA/sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA_TE-sense_man.bg
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT/
++ NAMES=' sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT/sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT_TE-sense_man.bg
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG/
++ NAMES=' sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG/sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG_TE-sense_man.bg
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA/
++ NAMES=' sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA/sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA_TE-sense_man.bg
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT/
++ NAMES=' sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT/sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT_TE-sense_man.bg
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG/
++ NAMES=' sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG/sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG_TE-sense_man.bg
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG/
++ NAMES=' sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG/sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG_TE-sense_man.bg
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA/
++ NAMES=' sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA/sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA_TE-sense_man.bg
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA/
++ NAMES=' sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA/sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA_TE-sense_man.bg
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC/
++ NAMES=' sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC/sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC_TE-sense_man.bg
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA/
++ NAMES=' sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA/sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA_TE-sense_man.bg
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC/
++ NAMES=' sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA sRNAseq_HsBam_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC/sRNAseq_HsBam_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC_TE-sense_man.bg
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repB_283080_sRBC_GTCAG/
++ NAMES=' sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA sRNAseq_HsBam_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC sRNAseq_HsBam_ControlKD_00hAHS_repB_283080_sRBC_GTCAG'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repB_283080_sRBC_GTCAG/sRNAseq_HsBam_ControlKD_00hAHS_repB_283080_sRBC_GTCAG_TE-sense_man.bg
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repC_283081_sRBC_CAGTG/
++ NAMES=' sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA sRNAseq_HsBam_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC sRNAseq_HsBam_ControlKD_00hAHS_repB_283080_sRBC_GTCAG sRNAseq_HsBam_ControlKD_00hAHS_repC_283081_sRBC_CAGTG'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repC_283081_sRBC_CAGTG/sRNAseq_HsBam_ControlKD_00hAHS_repC_283081_sRBC_CAGTG_TE-sense_man.bg
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repD_283082_sRBC_TGACT/
++ NAMES=' sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA sRNAseq_HsBam_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC sRNAseq_HsBam_ControlKD_00hAHS_repB_283080_sRBC_GTCAG sRNAseq_HsBam_ControlKD_00hAHS_repC_283081_sRBC_CAGTG sRNAseq_HsBam_ControlKD_68hAHS_repD_283082_sRBC_TGACT'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repD_283082_sRBC_TGACT/sRNAseq_HsBam_ControlKD_68hAHS_repD_283082_sRBC_TGACT_TE-sense_man.bg
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repB_283080_sRBC_ATGGA/
++ NAMES=' sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA sRNAseq_HsBam_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC sRNAseq_HsBam_ControlKD_00hAHS_repB_283080_sRBC_GTCAG sRNAseq_HsBam_ControlKD_00hAHS_repC_283081_sRBC_CAGTG sRNAseq_HsBam_ControlKD_68hAHS_repD_283082_sRBC_TGACT sRNAseq_HsBam_PiwiKD_68hAHS_repB_283080_sRBC_ATGGA'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repB_283080_sRBC_ATGGA/sRNAseq_HsBam_PiwiKD_68hAHS_repB_283080_sRBC_ATGGA_TE-sense_man.bg
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repB_283080_sRBC_TGACT/
++ NAMES=' sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA sRNAseq_HsBam_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC sRNAseq_HsBam_ControlKD_00hAHS_repB_283080_sRBC_GTCAG sRNAseq_HsBam_ControlKD_00hAHS_repC_283081_sRBC_CAGTG sRNAseq_HsBam_ControlKD_68hAHS_repD_283082_sRBC_TGACT sRNAseq_HsBam_PiwiKD_68hAHS_repB_283080_sRBC_ATGGA sRNAseq_HsBam_ControlKD_68hAHS_repB_283080_sRBC_TGACT'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repB_283080_sRBC_TGACT/sRNAseq_HsBam_ControlKD_68hAHS_repB_283080_sRBC_TGACT_TE-sense_man.bg
++ read NAME
++ tr ' ' '\t'
++ tr '~' '\t'
++ echo TE POS sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA sRNAseq_HsBam_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC sRNAseq_HsBam_ControlKD_00hAHS_repB_283080_sRBC_GTCAG sRNAseq_HsBam_ControlKD_00hAHS_repC_283081_sRBC_CAGTG sRNAseq_HsBam_ControlKD_68hAHS_repD_283082_sRBC_TGACT sRNAseq_HsBam_PiwiKD_68hAHS_repB_283080_sRBC_ATGGA sRNAseq_HsBam_ControlKD_68hAHS_repB_283080_sRBC_TGACT
+ echo /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/
+ cat /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP_TEhist.txt
+ tr '~' '\t'
+ sort -k2,2n
+ tr ' ' '\t'
+ for CATEGORY in $CATEGORIES
+ NAMES=
+ awk -v 'OFS=\t' '{
        
        NAME=$1"~"$2
        if(NAME in X) {
          X[NAME]=X[NAME]"\t"$3
        }else{
          X[NAME]=$3
        }
      }
      END {
        for (i in X) {
          print i,X[i]
        }
      }' /dev/fd/63
+ sort -k2,2n
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG/
++ NAMES=' sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG/sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG_TE-antisense_man.bg
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA/
++ NAMES=' sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA/sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA_TE-antisense_man.bg
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT/
++ NAMES=' sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT/sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT_TE-antisense_man.bg
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA/
++ NAMES=' sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA/sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA_TE-antisense_man.bg
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT/
++ NAMES=' sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT/sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT_TE-antisense_man.bg
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG/
++ NAMES=' sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG/sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG_TE-antisense_man.bg
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA/
++ NAMES=' sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA/sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA_TE-antisense_man.bg
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT/
++ NAMES=' sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT/sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT_TE-antisense_man.bg
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG/
++ NAMES=' sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG/sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG_TE-antisense_man.bg
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG/
++ NAMES=' sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG/sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG_TE-antisense_man.bg
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA/
++ NAMES=' sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA/sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA_TE-antisense_man.bg
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA/
++ NAMES=' sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA/sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA_TE-antisense_man.bg
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC/
++ NAMES=' sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC/sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC_TE-antisense_man.bg
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA/
++ NAMES=' sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA/sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA_TE-antisense_man.bg
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC/
++ NAMES=' sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA sRNAseq_HsBam_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC/sRNAseq_HsBam_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC_TE-antisense_man.bg
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repB_283080_sRBC_GTCAG/
++ NAMES=' sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA sRNAseq_HsBam_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC sRNAseq_HsBam_ControlKD_00hAHS_repB_283080_sRBC_GTCAG'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repB_283080_sRBC_GTCAG/sRNAseq_HsBam_ControlKD_00hAHS_repB_283080_sRBC_GTCAG_TE-antisense_man.bg
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repC_283081_sRBC_CAGTG/
++ NAMES=' sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA sRNAseq_HsBam_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC sRNAseq_HsBam_ControlKD_00hAHS_repB_283080_sRBC_GTCAG sRNAseq_HsBam_ControlKD_00hAHS_repC_283081_sRBC_CAGTG'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_00hAHS_repC_283081_sRBC_CAGTG/sRNAseq_HsBam_ControlKD_00hAHS_repC_283081_sRBC_CAGTG_TE-antisense_man.bg
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repD_283082_sRBC_TGACT/
++ NAMES=' sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA sRNAseq_HsBam_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC sRNAseq_HsBam_ControlKD_00hAHS_repB_283080_sRBC_GTCAG sRNAseq_HsBam_ControlKD_00hAHS_repC_283081_sRBC_CAGTG sRNAseq_HsBam_ControlKD_68hAHS_repD_283082_sRBC_TGACT'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repD_283082_sRBC_TGACT/sRNAseq_HsBam_ControlKD_68hAHS_repD_283082_sRBC_TGACT_TE-antisense_man.bg
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repB_283080_sRBC_ATGGA/
++ NAMES=' sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA sRNAseq_HsBam_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC sRNAseq_HsBam_ControlKD_00hAHS_repB_283080_sRBC_GTCAG sRNAseq_HsBam_ControlKD_00hAHS_repC_283081_sRBC_CAGTG sRNAseq_HsBam_ControlKD_68hAHS_repD_283082_sRBC_TGACT sRNAseq_HsBam_PiwiKD_68hAHS_repB_283080_sRBC_ATGGA'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_PiwiKD_68hAHS_repB_283080_sRBC_ATGGA/sRNAseq_HsBam_PiwiKD_68hAHS_repB_283080_sRBC_ATGGA_TE-antisense_man.bg
++ read NAME
++ libFOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repB_283080_sRBC_TGACT/
++ NAMES=' sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA sRNAseq_HsBam_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC sRNAseq_HsBam_ControlKD_00hAHS_repB_283080_sRBC_GTCAG sRNAseq_HsBam_ControlKD_00hAHS_repC_283081_sRBC_CAGTG sRNAseq_HsBam_ControlKD_68hAHS_repD_283082_sRBC_TGACT sRNAseq_HsBam_PiwiKD_68hAHS_repB_283080_sRBC_ATGGA sRNAseq_HsBam_ControlKD_68hAHS_repB_283080_sRBC_TGACT'
++ cat /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm//individual-libraries/sRNAseq_HsBam_ControlKD_68hAHS_repB_283080_sRBC_TGACT/sRNAseq_HsBam_ControlKD_68hAHS_repB_283080_sRBC_TGACT_TE-antisense_man.bg
++ read NAME
++ echo TE POS sRNAseq_HsBam_ControlKD_00hAHS_repA_283079_sRBC_CAGTG sRNAseq_Ovaries_MTD_ControlKD_repE_283083_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repA_283079_sRBC_GGTAT sRNAseq_HsBam_ControlKD_68hAHS_repA_283079_sRBC_AGCAA sRNAseq_HsBam_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT sRNAseq_Ovaries_MTD_PiwiKD_repE_283083_sRBC_ACGAG sRNAseq_HsBam_ControlKD_68hAHS_repC_283081_sRBC_AGCAA sRNAseq_Ovaries_MTD_PiwiKD_repF_283083_sRBC_CTGAT sRNAseq_HsBam_ControlKD_00hAHS_repD_283082_sRBC_GTCAG sRNAseq_Ovaries_MTD_ControlKD_repF_283083_sRBC_GAACG sRNAseq_HsBam_PiwiKD_68hAHS_repC_283081_sRBC_TACCA sRNAseq_HsBam_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA sRNAseq_HsBam_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC sRNAseq_HsBam_PiwiKD_68hAHS_repA_283079_sRBC_TACCA sRNAseq_HsBam_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC sRNAseq_HsBam_ControlKD_00hAHS_repB_283080_sRBC_GTCAG sRNAseq_HsBam_ControlKD_00hAHS_repC_283081_sRBC_CAGTG sRNAseq_HsBam_ControlKD_68hAHS_repD_283082_sRBC_TGACT sRNAseq_HsBam_PiwiKD_68hAHS_repB_283080_sRBC_ATGGA sRNAseq_HsBam_ControlKD_68hAHS_repB_283080_sRBC_TGACT
++ tr '~' '\t'
++ tr ' ' '\t'
+ echo /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/
+ cat /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/TMP_TEhist.txt
+ tr '~' '\t'
+ sort -k2,2n
+ tr ' ' '\t'
+ mkdir -p /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/plots/TEhist/
+ Rscript /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/script-files/plot_TEhist.R OPENdir=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/plots/TEhist/ inSENSE=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/plots/raw-data/TE_hist_sense.txt inANTISENSE=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/plots/raw-data/TE_hist_antisense.txt inALL=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/plots/raw-data/TE_hist_all.txt TYPE=sRNAseq
+ singularity exec --cleanenv -B /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/:/tmp /home/thomasgrnbk/AP_singu/R.simg Rscript /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/script-files/plot_TEhist.R OPENdir=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/plots/TEhist/ inSENSE=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/plots/raw-data/TE_hist_sense.txt inANTISENSE=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/plots/raw-data/TE_hist_antisense.txt inALL=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/plots/raw-data/TE_hist_all.txt TYPE=sRNAseq
── Attaching packages ─────────────────────────────────────── tidyverse 1.3.1 ──
✔ ggplot2 3.3.4.9000     ✔ purrr   0.3.4     
✔ tibble  3.1.2          ✔ dplyr   1.0.7     
✔ tidyr   1.1.3          ✔ stringr 1.4.0     
✔ readr   1.4.0          ✔ forcats 0.5.1     
── Conflicts ────────────────────────────────────────── tidyverse_conflicts() ──
✖ dplyr::filter() masks stats::filter()
✖ dplyr::lag()    masks stats::lag()

Attaching package: ‘plotly’

The following object is masked from ‘package:ggplot2’:

    last_plot

The following object is masked from ‘package:stats’:

    filter

The following object is masked from ‘package:graphics’:

    layout

There were 50 or more warnings (use warnings() to see the first 50)
+ rm -rf /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/Rscripts.pdf
+ [[ N != Y ]]
+ rm -rf /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2024-03-21-sRNAseq_HsBam_10Muniqnorm/TMP/
++ awk '{ print ($1-$2)/60 }'
+++ date +%s
++ echo -e 1711066079 1711064160
+ PROCESSED_TIME=31.9833
+ echo 'collect-numbers - processing_time=' 31.9833
+ exit