cn-1049 USER_NAME=thomasgrnbk TYPE=sRNAseq SLAM=N BASE_FOLDER=/faststorage/project/PAN_illumina/results/ FOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2025-11-25-sRNAseq_HsBam_fullov_exclrepA/ FOLDER_NAME=sRNAseq_HsBam_fullov_exclrepA RUNname=2025-11-25-sRNAseq_HsBam_fullov_exclrepA TMPdir=/faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2025-11-25-sRNAseq_HsBam_fullov_exclrepA/ LIB_STORAGE_FOLDER=/faststorage/project/PAN_illumina/data/libSTORAGE/ SINGULARITYdir=/home/thomasgrnbk/AP_singu/ downDIR=/faststorage/project/PAN_illumina/tmp//NGS_downloads/ DEBUG=N VERSION=r6.63 asmHUBpath= ASMdir= ASMname= BAM=N fwADAPTOR= rvADAPTOR= N_TRIMM= rawPAIRED=N onlyPAIRED=N FASTQout=N FASTQoutRAW=N SUBSAMPLE= MIN_LENGTH=18 MAX_LENGTH=1000 RAW= TRIMM= FIRST=1 LAST=1000 INVERT=N Ychrom=N RANDOMmulti=N MM=0 FILTERING_INPUT=rRNA:tRNA:mito:miRNA:pre_miRNA:snRNA:snoRNA:ncRNA WIG= WIG_FASTA= spikeINnorm=N noNORM= EXTEND=0 COMPUTING=C GRIDsystem=SLURM keepTMP=N SCRIPT_DIR=/faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2025-11-25-sRNAseq_HsBam_fullov_exclrepA/script-files/ BASE_UTILITY_LOCATION=/faststorage/project/PAN_illumina/utilities/AnnotationPipeline/ UTILITY_LOCATION=/faststorage/project/PAN_illumina/utilities/AnnotationPipeline/dmel/dm6/ RELEASE= VERSION=r6.63 UTILITY_DIR=/faststorage/project/PAN_illumina/backup/scripts/AnnotationPipeline/utility-files/ nFILES=16 FILE_CONTAINING_LIBRARIES=/faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2025-11-25-sRNAseq_HsBam_fullov_exclrepA/files.txt FOLDER_NAME=sRNAseq_HsBam_fullov_exclrepA GENOME_VERSION=dm6 subCOLOR=0~0~0 FORCE= SYSTEM=EXTERN LOGs=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2025-11-25-sRNAseq_HsBam_fullov_exclrepA/LOGs/ prepareREF=no nSPLITS=1000000 SE=N SE2nd= maxCOUNT=1000000 demuxFASTA=N autoViewLimits= only5end= PingPong= DGE=N GEO= noSTRANDED= FORCEimport= exportBAM=N exportBAMuncollapsed=N RATIOtracks=N GENOMEdir=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/ newCOLLECTION=N prepANNOTATIONgff= prepGENOMEfasta= prepTRANSCRIPTOMEfasta= prepCDSfasta= prepNCRNAfasta= 3 /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2025-11-25-sRNAseq_HsBam_fullov_exclrepA/ [1] "argmat" "args" "FILE" "i" "OUTdir" "PLOTdir" "TMP" [1] "argmat" "args" "CATEGORY" "FOLDER" "i" "PLOTdir" "TMP" length sRNAseq_HsBam_nos_ControlKD_68hAHS_repB_283080_sRBC_TGACT 1 18 0.0205678 2 19 0.0260532 3 20 0.0444278 4 21 0.1440620 5 22 0.5189920 6 23 2.6214700 sRNAseq_HsBam_nos_ControlKD_68hAHS_repC_283081_sRBC_AGCAA 1 0.0256405 2 0.0268480 3 0.0359137 4 0.0748085 5 0.2754610 6 1.9082900 sRNAseq_HsBam_nos_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC 1 0.0134479 2 0.0183337 3 0.0363333 4 0.1748870 5 0.4117450 6 1.2523100 sRNAseq_HsBam_nos_ControlKD_00hAHS_repD_283082_sRBC_GTCAG 1 0.0299907 2 0.0370643 3 0.0589412 4 0.2109750 5 0.4770990 6 1.5719400 sRNAseq_HsBam_nos_PiwiKD_68hAHS_repC_283081_sRBC_TACCA 1 0.0117239 2 0.0135088 3 0.0199551 4 0.0558459 5 0.2356600 6 1.4679400 sRNAseq_HsBam_nos_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA 1 0.0128438 2 0.0164066 3 0.0343452 4 0.1930490 5 0.3951830 6 1.2462200 sRNAseq_HsBam_nos_PiwiKD_68hAHS_repB_283080_sRBC_ATGGA 1 0.00684897 2 0.00907364 3 0.01854720 4 0.10673400 5 0.39491600 6 1.65665000 sRNAseq_Ovaries_MTD_ControlKD_ov_repF_283083_sRBC_GAACG 1 0.0130786 2 0.0158450 3 0.0235434 4 0.0672038 5 0.3925020 6 1.3422900 sRNAseq_HsBam_nos_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC 1 0.00806088 2 0.01198240 3 0.02360690 4 0.11297700 5 0.42543700 6 1.56479000 sRNAseq_HsBam_nos_ControlKD_00hAHS_repB_283080_sRBC_GTCAG 1 0.0159345 2 0.0198565 3 0.0326323 4 0.1185280 5 0.4490080 6 2.2348800 sRNAseq_HsBam_nos_ControlKD_68hAHS_repD_283082_sRBC_TGACT 1 0.0331421 2 0.0400631 3 0.0631685 4 0.2199870 5 0.4818710 6 1.8362600 sRNAseq_Ovaries_MTD_PiwiKD_ov_repE_283083_sRBC_ACGAG 1 0.0119689 2 0.0166811 3 0.0279099 4 0.0754376 5 0.3686290 6 1.4200000 sRNAseq_Ovaries_MTD_ControlKD_ov_repE_283083_sRBC_ATGGA 1 0.0129856 2 0.0157202 3 0.0232485 4 0.0688354 5 0.4144590 6 1.4785900 sRNAseq_HsBam_nos_ControlKD_00hAHS_repC_283081_sRBC_CAGTG 1 0.0202191 2 0.0231839 3 0.0328481 4 0.0774472 5 0.3152860 6 1.6799000 sRNAseq_HsBam_nos_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT 1 0.00990067 2 0.01162110 3 0.01560370 4 0.04580750 5 0.22793100 6 1.37783000 sRNAseq_Ovaries_MTD_PiwiKD_ov_repF_283083_sRBC_CTGAT 1 0.0165926 2 0.0206620 3 0.0314026 4 0.0701186 5 0.3640350 6 1.5956500 length variable value 1 18 sRNAseq_HsBam_nos_ControlKD_68hAHS_repB_283080_sRBC_TGACT 0.0205678 2 19 sRNAseq_HsBam_nos_ControlKD_68hAHS_repB_283080_sRBC_TGACT 0.0260532 3 20 sRNAseq_HsBam_nos_ControlKD_68hAHS_repB_283080_sRBC_TGACT 0.0444278 4 21 sRNAseq_HsBam_nos_ControlKD_68hAHS_repB_283080_sRBC_TGACT 0.1440620 5 22 sRNAseq_HsBam_nos_ControlKD_68hAHS_repB_283080_sRBC_TGACT 0.5189920 6 23 sRNAseq_HsBam_nos_ControlKD_68hAHS_repB_283080_sRBC_TGACT 2.6214700 [1] "argmat" "args" "CATEGORY" "FOLDER" "i" "PLOTdir" "TMP" length sRNAseq_HsBam_nos_ControlKD_68hAHS_repB_283080_sRBC_TGACT 1 18 0.0175359 2 19 0.0221971 3 20 0.0376796 4 21 0.1216190 5 22 0.3383060 6 23 2.1285900 sRNAseq_HsBam_nos_ControlKD_68hAHS_repC_283081_sRBC_AGCAA 1 0.0231218 2 0.0243387 3 0.0317441 4 0.0630637 5 0.1727100 6 1.4900100 sRNAseq_HsBam_nos_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC 1 0.0123021 2 0.0165035 3 0.0284077 4 0.1332700 5 0.1520490 6 0.9101300 sRNAseq_HsBam_nos_ControlKD_00hAHS_repD_283082_sRBC_GTCAG 1 0.0283263 2 0.0351599 3 0.0501872 4 0.1686940 5 0.2315720 6 1.2823400 sRNAseq_HsBam_nos_PiwiKD_68hAHS_repC_283081_sRBC_TACCA 1 0.0101958 2 0.0119422 3 0.0167319 4 0.0447512 5 0.1164690 6 1.0683300 sRNAseq_HsBam_nos_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA 1 0.0119531 2 0.0142333 3 0.0253670 4 0.1462520 5 0.1526290 6 0.9191610 sRNAseq_HsBam_nos_PiwiKD_68hAHS_repB_283080_sRBC_ATGGA 1 0.00584912 2 0.00744888 3 0.01424790 4 0.08186270 5 0.17264900 6 1.24574000 sRNAseq_Ovaries_MTD_ControlKD_ov_repF_283083_sRBC_GAACG 1 0.0112788 2 0.0135691 3 0.0196349 4 0.0496885 5 0.1423800 6 0.8330780 sRNAseq_HsBam_nos_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC 1 0.00712718 2 0.01041070 3 0.01895400 4 0.08733140 5 0.18373500 6 1.12897000 sRNAseq_HsBam_nos_ControlKD_00hAHS_repB_283080_sRBC_GTCAG 1 0.0148777 2 0.0183300 3 0.0292387 4 0.1003160 5 0.2708750 6 1.7999900 sRNAseq_HsBam_nos_ControlKD_68hAHS_repD_283082_sRBC_TGACT 1 0.0311105 2 0.0369854 3 0.0536777 4 0.1775970 5 0.2629000 6 1.5107100 sRNAseq_Ovaries_MTD_PiwiKD_ov_repE_283083_sRBC_ACGAG 1 0.00801498 2 0.01104840 3 0.01807490 4 0.05307410 5 0.13122100 6 0.89183000 sRNAseq_Ovaries_MTD_ControlKD_ov_repE_283083_sRBC_ATGGA 1 0.0115621 2 0.0137502 3 0.0198947 4 0.0499210 5 0.1466740 6 0.9579150 sRNAseq_HsBam_nos_ControlKD_00hAHS_repC_283081_sRBC_CAGTG 1 0.0186222 2 0.0213071 3 0.0299597 4 0.0661416 5 0.1803750 6 1.2755500 sRNAseq_HsBam_nos_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT 1 0.00857846 2 0.01023520 3 0.01284780 4 0.03522980 5 0.09889520 6 0.95816700 sRNAseq_Ovaries_MTD_PiwiKD_ov_repF_283083_sRBC_CTGAT 1 0.0097866 2 0.0114600 3 0.0177232 4 0.0473078 5 0.1415800 6 1.0291600 length variable value 1 18 sRNAseq_HsBam_nos_ControlKD_68hAHS_repB_283080_sRBC_TGACT 0.0175359 2 19 sRNAseq_HsBam_nos_ControlKD_68hAHS_repB_283080_sRBC_TGACT 0.0221971 3 20 sRNAseq_HsBam_nos_ControlKD_68hAHS_repB_283080_sRBC_TGACT 0.0376796 4 21 sRNAseq_HsBam_nos_ControlKD_68hAHS_repB_283080_sRBC_TGACT 0.1216190 5 22 sRNAseq_HsBam_nos_ControlKD_68hAHS_repB_283080_sRBC_TGACT 0.3383060 6 23 sRNAseq_HsBam_nos_ControlKD_68hAHS_repB_283080_sRBC_TGACT 2.1285900 [1] "argmat" "args" "CATEGORY" "FOLDER" "i" "PLOTdir" "TMP" length sRNAseq_HsBam_nos_ControlKD_68hAHS_repB_283080_sRBC_TGACT 1 18 0.0145811 2 19 0.0188374 3 20 0.0317893 4 21 0.1043820 5 22 0.2884700 6 23 1.8638300 sRNAseq_HsBam_nos_ControlKD_68hAHS_repC_283081_sRBC_AGCAA 1 0.0193012 2 0.0208483 3 0.0266594 4 0.0538942 5 0.1475320 6 1.3169600 sRNAseq_HsBam_nos_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC 1 0.0101695 2 0.0138299 3 0.0237766 4 0.1116580 5 0.1256310 6 0.7947160 sRNAseq_HsBam_nos_ControlKD_00hAHS_repD_283082_sRBC_GTCAG 1 0.0236693 2 0.0297987 3 0.0422655 4 0.1428160 5 0.1935630 6 1.1270800 sRNAseq_HsBam_nos_PiwiKD_68hAHS_repC_283081_sRBC_TACCA 1 0.00808989 2 0.00990048 3 0.01412520 4 0.03649440 5 0.09630820 6 0.91577500 sRNAseq_HsBam_nos_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA 1 0.00940573 2 0.01127620 3 0.02125200 4 0.12101000 5 0.11922800 6 0.78967200 sRNAseq_HsBam_nos_PiwiKD_68hAHS_repB_283080_sRBC_ATGGA 1 0.00484927 2 0.00627406 3 0.01182320 4 0.06831480 5 0.13800400 6 1.08081000 sRNAseq_Ovaries_MTD_ControlKD_ov_repF_283083_sRBC_GAACG 1 0.00937232 2 0.01136840 3 0.01655110 4 0.04107320 5 0.12028400 6 0.73540800 sRNAseq_HsBam_nos_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC 1 0.00602232 2 0.00858997 3 0.01591950 4 0.07469540 5 0.15286100 6 0.98607200 sRNAseq_HsBam_nos_ControlKD_00hAHS_repB_283080_sRBC_GTCAG 1 0.0128110 2 0.0156057 3 0.0248940 4 0.0862719 5 0.2321950 6 1.5895200 sRNAseq_HsBam_nos_ControlKD_68hAHS_repD_283082_sRBC_TGACT 1 0.0264409 2 0.0310877 3 0.0455969 4 0.1508070 5 0.2230040 6 1.3284900 sRNAseq_Ovaries_MTD_PiwiKD_ov_repE_283083_sRBC_ACGAG 1 0.00674932 2 0.00928064 3 0.01554880 4 0.04375940 5 0.11366900 6 0.79559800 sRNAseq_Ovaries_MTD_ControlKD_ov_repE_283083_sRBC_ATGGA 1 0.00975389 2 0.01169110 3 0.01709920 4 0.04142180 5 0.12532100 6 0.85633500 sRNAseq_HsBam_nos_ControlKD_00hAHS_repC_283081_sRBC_CAGTG 1 0.0155683 2 0.0177633 3 0.0253471 4 0.0569800 5 0.1542330 6 1.1242200 sRNAseq_HsBam_nos_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT 1 0.00689782 2 0.00860236 3 0.01056970 4 0.03017200 5 0.08294100 6 0.83665100 sRNAseq_Ovaries_MTD_PiwiKD_ov_repF_283083_sRBC_CTGAT 1 0.00825775 2 0.00962922 3 0.01529820 4 0.03903080 5 0.12276500 6 0.91871400 length variable value 1 18 sRNAseq_HsBam_nos_ControlKD_68hAHS_repB_283080_sRBC_TGACT 0.0145811 2 19 sRNAseq_HsBam_nos_ControlKD_68hAHS_repB_283080_sRBC_TGACT 0.0188374 3 20 sRNAseq_HsBam_nos_ControlKD_68hAHS_repB_283080_sRBC_TGACT 0.0317893 4 21 sRNAseq_HsBam_nos_ControlKD_68hAHS_repB_283080_sRBC_TGACT 0.1043820 5 22 sRNAseq_HsBam_nos_ControlKD_68hAHS_repB_283080_sRBC_TGACT 0.2884700 6 23 sRNAseq_HsBam_nos_ControlKD_68hAHS_repB_283080_sRBC_TGACT 1.8638300 [1] "argmat" "args" "CATEGORY" "FOLDER" "i" "PLOTdir" "TMP" length sRNAseq_HsBam_nos_ControlKD_68hAHS_repB_283080_sRBC_TGACT 1 18 0.00206305 2 19 0.00208233 3 20 0.00296443 4 21 0.00519618 5 22 0.01974360 6 23 0.07938880 sRNAseq_HsBam_nos_ControlKD_68hAHS_repC_283081_sRBC_AGCAA 1 0.00146221 2 0.00131127 3 0.00182069 4 0.00239614 5 0.00682050 6 0.04515870 sRNAseq_HsBam_nos_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC 1 0.000190976 2 0.000270550 3 0.000254635 4 0.000938967 5 0.002737330 6 0.016790000 sRNAseq_HsBam_nos_ControlKD_00hAHS_repD_283082_sRBC_GTCAG 1 0.000736165 2 0.000512115 3 0.000864194 4 0.001520340 5 0.004288960 6 0.025701800 sRNAseq_HsBam_nos_PiwiKD_68hAHS_repC_283081_sRBC_TACCA 1 0.000577849 2 0.000513644 3 0.000796148 4 0.000924559 5 0.003107540 6 0.023447800 sRNAseq_HsBam_nos_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA 1 0.000178139 2 0.000302836 3 0.000213767 4 0.001086650 5 0.002529570 6 0.016941000 sRNAseq_HsBam_nos_PiwiKD_68hAHS_repB_283080_sRBC_ATGGA 1 0.000474929 2 0.000499925 3 0.000649903 4 0.001424790 5 0.005574160 6 0.029245600 sRNAseq_Ovaries_MTD_ControlKD_ov_repF_283083_sRBC_GAACG 1 0.000415444 2 0.000446935 3 0.000585013 4 0.001329900 5 0.005238470 6 0.029840500 sRNAseq_HsBam_nos_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC 1 0.000342354 2 0.000466846 3 0.000638023 4 0.001322730 5 0.005882260 6 0.026454600 sRNAseq_HsBam_nos_ControlKD_00hAHS_repB_283080_sRBC_GTCAG 1 0.000270077 2 0.000575381 3 0.000692805 4 0.001444320 5 0.005225400 6 0.039114100 sRNAseq_HsBam_nos_ControlKD_68hAHS_repD_283082_sRBC_TGACT 1 0.000667086 2 0.000803536 3 0.000993049 4 0.001970940 5 0.005806680 6 0.035014400 sRNAseq_Ovaries_MTD_PiwiKD_ov_repE_283083_sRBC_ACGAG 1 0.000648520 2 0.000577915 3 0.000862950 4 0.001569000 5 0.004620710 6 0.024847700 sRNAseq_Ovaries_MTD_ControlKD_ov_repE_283083_sRBC_ATGGA 1 0.000363514 2 0.000384621 3 0.000462014 4 0.001071780 5 0.004296500 6 0.029655700 sRNAseq_HsBam_nos_ControlKD_00hAHS_repC_283081_sRBC_CAGTG 1 0.000916159 2 0.001005230 3 0.001024320 4 0.001514210 5 0.005426970 6 0.031499300 sRNAseq_HsBam_nos_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT 1 0.000844305 2 0.000772619 3 0.001202740 4 0.001457620 5 0.005002110 6 0.026436300 sRNAseq_Ovaries_MTD_PiwiKD_ov_repF_283083_sRBC_CTGAT 1 0.00145819 2 0.00135541 3 0.00158025 4 0.00243461 5 0.00642376 6 0.03432540 length variable value 1 18 sRNAseq_HsBam_nos_ControlKD_68hAHS_repB_283080_sRBC_TGACT 0.00206305 2 19 sRNAseq_HsBam_nos_ControlKD_68hAHS_repB_283080_sRBC_TGACT 0.00208233 3 20 sRNAseq_HsBam_nos_ControlKD_68hAHS_repB_283080_sRBC_TGACT 0.00296443 4 21 sRNAseq_HsBam_nos_ControlKD_68hAHS_repB_283080_sRBC_TGACT 0.00519618 5 22 sRNAseq_HsBam_nos_ControlKD_68hAHS_repB_283080_sRBC_TGACT 0.01974360 6 23 sRNAseq_HsBam_nos_ControlKD_68hAHS_repB_283080_sRBC_TGACT 0.07938880 [1] "argmat" "args" "CATEGORY" "FOLDER" "i" "PLOTdir" "TMP" length sRNAseq_HsBam_nos_ControlKD_68hAHS_repB_283080_sRBC_TGACT 1 18 0.000255471 2 19 0.000761593 3 20 0.002530610 4 21 0.014585900 5 22 0.152270000 6 23 0.375190000 sRNAseq_HsBam_nos_ControlKD_68hAHS_repC_283081_sRBC_AGCAA 1 0.000198106 2 0.000235840 3 0.001349010 4 0.007886490 5 0.091581400 6 0.349430000 sRNAseq_HsBam_nos_PiwiKD_00hAHS_repD_283082_sRBC_CGTTC 1 0.000493356 2 0.001209520 3 0.007161610 4 0.039627600 5 0.253983000 6 0.312390000 sRNAseq_HsBam_nos_ControlKD_00hAHS_repD_283082_sRBC_GTCAG 1 0.000176039 2 0.000816183 3 0.006673490 4 0.039208800 5 0.236117000 6 0.242454000 sRNAseq_HsBam_nos_PiwiKD_68hAHS_repC_283081_sRBC_TACCA 1 3.85233e-05 2 2.31140e-04 3 1.70787e-03 4 8.84751e-03 5 1.12873e-01 6 3.61644e-01 sRNAseq_HsBam_nos_PiwiKD_68hAHS_repD_283082_sRBC_ATGGA 1 0.000374091 2 0.001264790 3 0.007944990 4 0.044410000 5 0.237370000 6 0.298792000 sRNAseq_HsBam_nos_PiwiKD_68hAHS_repB_283080_sRBC_ATGGA 1 0.000249963 2 0.000624906 3 0.002824580 4 0.022346600 5 0.213668000 6 0.366420000 sRNAseq_Ovaries_MTD_ControlKD_ov_repF_283083_sRBC_GAACG 1 0.000535353 2 0.001031950 3 0.002194710 4 0.013968800 5 0.238587000 6 0.461329000 sRNAseq_HsBam_nos_PiwiKD_00hAHS_repB_283080_sRBC_CGTTC 1 0.000357915 2 0.000746954 3 0.003641400 4 0.023435700 5 0.233065000 6 0.394858000 sRNAseq_HsBam_nos_ControlKD_00hAHS_repB_283080_sRBC_GTCAG 1 0.000199622 2 0.000528411 3 0.002066670 4 0.015136000 5 0.166837000 6 0.367645000 sRNAseq_HsBam_nos_ControlKD_68hAHS_repD_283082_sRBC_TGACT 1 0.000250157 2 0.001084010 3 0.007019570 4 0.038410500 5 0.206524000 6 0.261702000 sRNAseq_Ovaries_MTD_PiwiKD_ov_repE_283083_sRBC_ACGAG 1 0.00066944 2 0.00145656 3 0.00312231 4 0.01575540 5 0.22448200 6 0.48584400 sRNAseq_Ovaries_MTD_ControlKD_ov_repE_283083_sRBC_ATGGA 1 0.000492502 2 0.000935754 3 0.002157630 4 0.016315900 5 0.258944000 6 0.475487000 sRNAseq_HsBam_nos_ControlKD_00hAHS_repC_283081_sRBC_CAGTG 1 0.000190866 2 0.000369008 3 0.001266080 4 0.008767130 5 0.126500000 6 0.355597000 sRNAseq_HsBam_nos_PiwiKD_00hAHS_repC_283081_sRBC_GGTAT 1 0.000143373 2 0.000262850 3 0.001186810 4 0.008443050 5 0.122034000 6 0.382192000 sRNAseq_Ovaries_MTD_PiwiKD_ov_repF_283083_sRBC_CTGAT 1 0.000613469 2 0.001088830 3 0.002318980 4 0.012343300 5 0.202117000 6 0.503761000 length variable value 1 18 sRNAseq_HsBam_nos_ControlKD_68hAHS_repB_283080_sRBC_TGACT 0.000255471 2 19 sRNAseq_HsBam_nos_ControlKD_68hAHS_repB_283080_sRBC_TGACT 0.000761593 3 20 sRNAseq_HsBam_nos_ControlKD_68hAHS_repB_283080_sRBC_TGACT 0.002530610 4 21 sRNAseq_HsBam_nos_ControlKD_68hAHS_repB_283080_sRBC_TGACT 0.014585900 5 22 sRNAseq_HsBam_nos_ControlKD_68hAHS_repB_283080_sRBC_TGACT 0.152270000 6 23 sRNAseq_HsBam_nos_ControlKD_68hAHS_repB_283080_sRBC_TGACT 0.375190000 /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2025-11-25-sRNAseq_HsBam_fullov_exclrepA/TMP/ /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2025-11-25-sRNAseq_HsBam_fullov_exclrepA/TMP/ /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2025-11-25-sRNAseq_HsBam_fullov_exclrepA/TMP/ /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2025-11-25-sRNAseq_HsBam_fullov_exclrepA/TMP/ [1] "hi" [1] "argmat" "args" "i" "INPUT" "OPENdir" "TYPE" [1][1] "1731" "1360" [1] "17.6" [1] "297" [1] "3S18" [1] "412" [1] "AATAT_87_randomDistribution" [1] "accord" [1] "accord2_new" [1] "ATAAGn_CTTATn_randomDistribution" [1] "baggins" [1] "Bari1" [1] "blood" [1] "Bari2" [1] "BS" [1] "BS3" [1] "BS4" [1] "Burdock" [1] "CACAAn_DMDNASMEM_randomDistribution" [1] "Circe" [1] "Copia1" [1] "copia" [1] "Cr1a" [1] "diver2" [1] "diver" [1] "Dm88" [1] "dm359_randomDistribution" [1] "DMSAT6_randomDistribution" [1] "Doc" [1] "Doc3-element" [1] "Doc4-element" [1] "Dsim_ninja" [1] "F-element" [1] "flea" [1] "frogger" [1] "Fw3" [1] "Fw2" [1] "G3" [1] "G2" [1] "G5" [1] "G4" [1] "G5A" [1] "G6" [1] "G7" [1] "GAGAAn_TTCTCn_randomDistribution" [1] "GATE" [1] "G-element" [1] "gypsy10_new" [1] "gtwin" [1] "gypsy" [1] "gypsy11" [1] "gypsy2_new" [1] "gypsy12" [1] "gypsy4" [1] "gypsy3_new" [1] "gypsy6_new" [1] "gypsy5" [1] "gypsy8" [1] "gypsy7_new" [1] "Helena" [1] "gypsy9_new" [1] "HeT-A" [1] "Helitron" [1] "HMS-Beagle2" [1] "HMS-Beagle" [1] "hopper" [1] "hobo" [1] "Idefix" [1] "hopper2" [1] "I-element_new" [1] "INE-1" [1] "invader2" [1] "invader1" [1] "invader4" [1] "invader3" [1] "invader6" [1] "invader5" [1] "jockey" [1] "Ivk" [1] "Juan" [1] "jockey2" [1] "mariner2" [1] "looper1" [1] "McClintock" [1] "Max-element" [1] "mdg3" [1] "mdg1" [1] "NOF" [1] "micropia" [1] "opus" [1] "NTS_DM_randomDistribution" [1] "P-element" [1] "Osvaldo" [1] "pogo" [1] "Pifo_Dya_repbase" [1] "R1-2" [1] "Quasimodo" [1] "R2-element" [1] "R1A1-element" [1] "Repbase_Chimpo" [1] "Repbase_Bica" [1] "Repbase_DNAREP1" [1] "Repbase_Rt1a" [1] "Repbase_Chouto" [1] "Repbase_Transib1" [1] "Repbase_FB4" [1] "rooA" [1] "Repbase_Rt1b" [1] "RSP_randomDistribution" [1] "roo" [1] "S2" [1] "rover" [1] "SAR_DM_randomDistribution" [1] "Satellite_353bp_1pt688_randomDistribution" [1] "Rt1c" [1] "Satellite_359bp_1pt688_randomDistribution" [1] "SAR2_DM_randomDistribution" [1] "Satellite_RRsp_randomDistribution" [1] "Satellite_260bp_1pt688_randomDistribution" [1] "small_kipf_region_randomDistribution" [1] "Satellite_356bp_1pt688_randomDistribution" [1] "Satellite_LRsp_randomDistribution" [1] "some_heterochromatin_region_randomDistribution" [1] "S-element" [1] "Stalker" [1] "some_gene_Ebx_randomDistribution" [1] "springer" [1] "Tabor" [1] "TART-A" [1] "Stalker2" [1] "TAHRE" [1] "TAS_2R_randomDistribution" [1] "TAS_X_randomDistribution" [1] "TAS_2L_randomDistribution" [1] "TAS_3L_randomDistribution" [1] "Tc1-2" [1] "Tc1" [1] "Tirant" [1] "Tc3" [1] "transib2" [1] "tirantS_Dsi_Lerat" [1] "transib4" [1] "transib3" [1] "Transpac" [1] "Transib5" [1] "X-element" [1] "XDMR_randomDistribution" [1] "ZAM"