cn-1056 USER_NAME=thomasgrnbk TYPE=sRNAseq SLAM=N BASE_FOLDER=/faststorage/project/PAN_illumina/results/ FOLDER=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2026-03-11-sRNAseq_GEO_format/ FOLDER_NAME=sRNAseq_GEO_format RUNname=2026-03-11-sRNAseq_GEO_format TMPdir=/faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2026-03-11-sRNAseq_GEO_format/ LIB_STORAGE_FOLDER=/faststorage/project/PAN_illumina/data/libSTORAGE/ SINGULARITYdir=/home/thomasgrnbk/AP_singu/ downDIR=/faststorage/project/PAN_illumina/tmp//NGS_downloads/ DEBUG=N VERSION=r6.63 asmHUBpath= ASMdir= ASMname= DEMUXonly=N BAM=N fwADAPTOR= rvADAPTOR= N_TRIMM= rawPAIRED=N onlyPAIRED=N FASTQout=N FASTQoutRAW=N SUBSAMPLE= MIN_LENGTH=18 MAX_LENGTH=35 RAW= TRIMM= FIRST=1 LAST=1000 INVERT=N Ychrom=N RANDOMmulti=N MM=0 FILTERING_INPUT=rRNA:tRNA:mito:miRNA:pre_miRNA:snRNA:snoRNA:ncRNA WIG= WIG_FASTA= spikeINnorm=N noNORM= EXTEND=0 COMPUTING=C GRIDsystem=SLURM keepTMP=N SCRIPT_DIR=/faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2026-03-11-sRNAseq_GEO_format/script-files/ BASE_UTILITY_LOCATION=/faststorage/project/PAN_illumina/utilities/AnnotationPipeline/ UTILITY_LOCATION=/faststorage/project/PAN_illumina/utilities/AnnotationPipeline/dmel/dm6/ RELEASE= VERSION=r6.63 UTILITY_DIR=/faststorage/project/PAN_illumina/backup/scripts/AnnotationPipeline/utility-files/ nFILES=8 FILE_CONTAINING_LIBRARIES=/faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2026-03-11-sRNAseq_GEO_format/files.txt FOLDER_NAME=sRNAseq_GEO_format GENOME_VERSION=dm6 subCOLOR=0~0~0 FORCE= SYSTEM=EXTERN LOGs=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2026-03-11-sRNAseq_GEO_format/LOGs/ prepareREF=no nSPLITS=1000000 SE=N SE2nd= maxCOUNT=1000000 demuxFASTA=N autoViewLimits= only5end= PingPong= DGE=N GEO= noSTRANDED= FORCEimport= exportBAM=N exportBAMuncollapsed=N exportSalmon=N RATIOtracks=N GENOMEdir=/faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/ newCOLLECTION=N prepANNOTATIONgff= prepGENOMEfasta= prepTRANSCRIPTOMEfasta= prepCDSfasta= prepNCRNAfasta= extraSEQ= FORCEquant_unstranded=N 3 /faststorage/project/PAN_illumina/results//thomasgrnbk/dm6/sRNAseq/2026-03-11-sRNAseq_GEO_format/ [1] "argmat" "args" "FILE" "i" "OUTdir" "PLOTdir" "TMP" [1] "argmat" "args" "CATEGORY" "FOLDER" "i" "PLOTdir" "TMP" length sRNAseq_Ovaries_MTD_PiwiKD_rep2_283083_sRBC_CTGAT 1 18 0.0130664 2 19 0.0158289 3 20 0.0235085 4 21 0.0672221 5 22 0.3923170 6 23 1.3427400 sRNAseq_HsBam_ControlKD_0hAHS_rep3_283082_sRBC_GTCAG 1 0.0300792 2 0.0367545 3 0.0587199 4 0.2108290 5 0.4767420 6 1.5717500 sRNAseq_HsBam_PiwiKD_0hAHS_rep2_283081_sRBC_GGTAT 1 0.00985428 2 0.01163350 3 0.01551400 4 0.04583370 5 0.22774300 6 1.37769000 sRNAseq_HsBam_ControlKD_0hAHS_rep1_283080_sRBC_GTCAG 1 0.0158580 2 0.0197781 3 0.0326279 4 0.1184310 5 0.4489030 6 2.2345700 sRNAseq_HsBam_ControlKD_0hAHS_rep2_283081_sRBC_CAGTG 1 0.0201828 2 0.0231524 3 0.0328388 4 0.0773888 5 0.3151470 6 1.6798600 sRNAseq_HsBam_PiwiKD_0hAHS_rep3_283082_sRBC_CGTTC 1 0.0134611 2 0.0183077 3 0.0361968 4 0.1750740 5 0.4110460 6 1.2517200 sRNAseq_HsBam_PiwiKD_0hAHS_rep1_283080_sRBC_CGTTC 1 0.00808985 2 0.01196980 3 0.02359410 4 0.11305400 5 0.42453700 6 1.56335000 sRNAseq_Ovaries_MTD_ControlKD_rep1_283083_sRBC_ATGGA 1 0.0129813 2 0.0157225 3 0.0232307 4 0.0688606 5 0.4142440 6 1.4786700 length variable value 1 18 sRNAseq_Ovaries_MTD_PiwiKD_rep2_283083_sRBC_CTGAT 0.0130664 2 19 sRNAseq_Ovaries_MTD_PiwiKD_rep2_283083_sRBC_CTGAT 0.0158289 3 20 sRNAseq_Ovaries_MTD_PiwiKD_rep2_283083_sRBC_CTGAT 0.0235085 4 21 sRNAseq_Ovaries_MTD_PiwiKD_rep2_283083_sRBC_CTGAT 0.0672221 5 22 sRNAseq_Ovaries_MTD_PiwiKD_rep2_283083_sRBC_CTGAT 0.3923170 6 23 sRNAseq_Ovaries_MTD_PiwiKD_rep2_283083_sRBC_CTGAT 1.3427400 [1] "argmat" "args" "CATEGORY" "FOLDER" "i" "PLOTdir" "TMP" length sRNAseq_Ovaries_MTD_PiwiKD_rep2_283083_sRBC_CTGAT 1 18 0.0112753 2 19 0.0135496 3 20 0.0196069 4 21 0.0497097 5 22 0.1422860 6 23 0.8333560 sRNAseq_HsBam_ControlKD_0hAHS_rep3_283082_sRBC_GTCAG 1 0.0283983 2 0.0348634 3 0.0499273 4 0.1686120 5 0.2315990 6 1.2819800 sRNAseq_HsBam_PiwiKD_0hAHS_rep2_283081_sRBC_GGTAT 1 0.00855809 2 0.01023270 3 0.01276870 4 0.03520650 5 0.09883260 6 0.95807100 sRNAseq_HsBam_ControlKD_0hAHS_rep1_283080_sRBC_GTCAG 1 0.0148158 2 0.0182384 3 0.0292289 4 0.1002760 5 0.2709000 6 1.7997200 sRNAseq_HsBam_ControlKD_0hAHS_rep2_283081_sRBC_CAGTG 1 0.0185759 2 0.0212562 3 0.0299271 4 0.0661147 5 0.1803790 6 1.2754800 sRNAseq_HsBam_PiwiKD_0hAHS_rep3_283082_sRBC_CGTTC 1 0.0123178 2 0.0164721 3 0.0283230 4 0.1332580 5 0.1518400 6 0.9095890 sRNAseq_HsBam_PiwiKD_0hAHS_rep1_283080_sRBC_CGTTC 1 0.00714735 2 0.01039900 3 0.01896010 4 0.08733900 5 0.18308200 6 1.12773000 sRNAseq_Ovaries_MTD_ControlKD_rep1_283083_sRBC_ATGGA 1 0.0115644 2 0.0137513 3 0.0198901 4 0.0499799 5 0.1466440 6 0.9579050 length variable value 1 18 sRNAseq_Ovaries_MTD_PiwiKD_rep2_283083_sRBC_CTGAT 0.0112753 2 19 sRNAseq_Ovaries_MTD_PiwiKD_rep2_283083_sRBC_CTGAT 0.0135496 3 20 sRNAseq_Ovaries_MTD_PiwiKD_rep2_283083_sRBC_CTGAT 0.0196069 4 21 sRNAseq_Ovaries_MTD_PiwiKD_rep2_283083_sRBC_CTGAT 0.0497097 5 22 sRNAseq_Ovaries_MTD_PiwiKD_rep2_283083_sRBC_CTGAT 0.1422860 6 23 sRNAseq_Ovaries_MTD_PiwiKD_rep2_283083_sRBC_CTGAT 0.8333560 [1] "argmat" "args" "CATEGORY" "FOLDER" "i" "PLOTdir" "TMP" length sRNAseq_Ovaries_MTD_PiwiKD_rep2_283083_sRBC_CTGAT 1 18 0.0093728 2 19 0.0113499 3 20 0.0165312 4 21 0.0410906 5 22 0.1202060 6 23 0.7356510 sRNAseq_HsBam_ControlKD_0hAHS_rep3_283082_sRBC_GTCAG 1 0.0237433 2 0.0295943 3 0.0420721 4 0.1428320 5 0.1934860 6 1.1268500 sRNAseq_HsBam_PiwiKD_0hAHS_rep2_283081_sRBC_GGTAT 1 0.00689155 2 0.00860639 3 0.01049830 4 0.03016670 5 0.08294020 6 0.83654300 sRNAseq_HsBam_ControlKD_0hAHS_rep1_283080_sRBC_GTCAG 1 0.0127669 2 0.0155145 3 0.0249061 4 0.0861944 5 0.2321610 6 1.5894200 sRNAseq_HsBam_ControlKD_0hAHS_rep2_283081_sRBC_CAGTG 1 0.0155163 2 0.0177146 3 0.0253185 4 0.0569296 5 0.1543020 6 1.1241500 sRNAseq_HsBam_PiwiKD_0hAHS_rep3_283082_sRBC_CGTTC 1 0.0101924 2 0.0137670 3 0.0236857 4 0.1117300 5 0.1253680 6 0.7940420 sRNAseq_HsBam_PiwiKD_0hAHS_rep1_283080_sRBC_CGTTC 1 0.00603205 2 0.00857681 3 0.01589700 4 0.07472510 5 0.15223100 6 0.98493600 sRNAseq_Ovaries_MTD_ControlKD_rep1_283083_sRBC_ATGGA 1 0.00974957 2 0.01169950 3 0.01709670 4 0.04147180 5 0.12530600 6 0.85635100 length variable value 1 18 sRNAseq_Ovaries_MTD_PiwiKD_rep2_283083_sRBC_CTGAT 0.0093728 2 19 sRNAseq_Ovaries_MTD_PiwiKD_rep2_283083_sRBC_CTGAT 0.0113499 3 20 sRNAseq_Ovaries_MTD_PiwiKD_rep2_283083_sRBC_CTGAT 0.0165312 4 21 sRNAseq_Ovaries_MTD_PiwiKD_rep2_283083_sRBC_CTGAT 0.0410906 5 22 sRNAseq_Ovaries_MTD_PiwiKD_rep2_283083_sRBC_CTGAT 0.1202060 6 23 sRNAseq_Ovaries_MTD_PiwiKD_rep2_283083_sRBC_CTGAT 0.7356510 [1] "argmat" "args" "CATEGORY" "FOLDER" "i" "PLOTdir" "TMP" length sRNAseq_Ovaries_MTD_PiwiKD_rep2_283083_sRBC_CTGAT 1 18 0.000412301 2 19 0.000447780 3 20 0.000586029 4 21 0.001326210 5 22 0.005231440 6 23 0.029863000 sRNAseq_HsBam_ControlKD_0hAHS_rep3_283082_sRBC_GTCAG 1 0.000743494 2 0.000517214 3 0.000872798 4 0.001519310 5 0.004315500 6 0.025779900 sRNAseq_HsBam_PiwiKD_0hAHS_rep2_283081_sRBC_GGTAT 1 0.000853393 2 0.000780936 3 0.001199580 4 0.001465260 5 0.005031800 6 0.026455200 sRNAseq_HsBam_ControlKD_0hAHS_rep1_283080_sRBC_GTCAG 1 0.000272392 2 0.000580314 3 0.000698746 4 0.001433020 5 0.005175460 6 0.039023200 sRNAseq_HsBam_ControlKD_0hAHS_rep2_283081_sRBC_CAGTG 1 0.000919153 2 0.001015570 3 0.001034850 4 0.001504070 5 0.005450640 6 0.031579000 sRNAseq_HsBam_PiwiKD_0hAHS_rep3_283082_sRBC_CGTTC 1 0.000193221 2 0.000273730 3 0.000257628 4 0.000933902 5 0.002737300 6 0.016794100 sRNAseq_HsBam_PiwiKD_0hAHS_rep1_283080_sRBC_CGTTC 1 0.000345586 2 0.000471254 3 0.000628338 4 0.001335220 5 0.005859250 6 0.026405900 sRNAseq_Ovaries_MTD_ControlKD_rep1_283083_sRBC_ATGGA 1 0.000364868 2 0.000386192 3 0.000462009 4 0.001073280 5 0.004302600 6 0.029639600 length variable value 1 18 sRNAseq_Ovaries_MTD_PiwiKD_rep2_283083_sRBC_CTGAT 0.000412301 2 19 sRNAseq_Ovaries_MTD_PiwiKD_rep2_283083_sRBC_CTGAT 0.000447780 3 20 sRNAseq_Ovaries_MTD_PiwiKD_rep2_283083_sRBC_CTGAT 0.000586029 4 21 sRNAseq_Ovaries_MTD_PiwiKD_rep2_283083_sRBC_CTGAT 0.001326210 5 22 sRNAseq_Ovaries_MTD_PiwiKD_rep2_283083_sRBC_CTGAT 0.005231440 6 23 sRNAseq_Ovaries_MTD_PiwiKD_rep2_283083_sRBC_CTGAT 0.029863000 [1] "argmat" "args" "CATEGORY" "FOLDER" "i" "PLOTdir" "TMP" length sRNAseq_Ovaries_MTD_PiwiKD_rep2_283083_sRBC_CTGAT 1 18 0.000534645 2 19 0.001031360 3 20 0.002186290 4 21 0.013975400 5 22 0.238494000 6 23 0.461449000 sRNAseq_HsBam_ControlKD_0hAHS_rep3_283082_sRBC_GTCAG 1 0.000177792 2 0.000791983 3 0.006691450 4 0.039178900 5 0.235688000 6 0.242428000 sRNAseq_HsBam_PiwiKD_0hAHS_rep2_283081_sRBC_GGTAT 1 0.000120763 2 0.000265679 3 0.001183480 4 0.008477580 5 0.121906000 6 0.382095000 sRNAseq_HsBam_ControlKD_0hAHS_rep1_283080_sRBC_GTCAG 1 0.000201334 2 0.000532942 3 0.002060710 4 0.015076300 5 0.166799000 6 0.367647000 sRNAseq_HsBam_ControlKD_0hAHS_rep2_283081_sRBC_CAGTG 1 0.000192829 2 0.000372803 3 0.001272670 4 0.008748020 5 0.126335000 6 0.355564000 sRNAseq_HsBam_PiwiKD_0hAHS_rep3_283082_sRBC_CGTTC 1 0.000499155 2 0.001207630 3 0.007100880 4 0.039851900 5 0.253474000 6 0.312310000 sRNAseq_HsBam_PiwiKD_0hAHS_rep1_283080_sRBC_CGTTC 1 0.000361294 2 0.000738297 3 0.003628650 4 0.023499800 5 0.232846000 6 0.394801000 sRNAseq_Ovaries_MTD_ControlKD_rep1_283083_sRBC_ATGGA 1 0.000485701 2 0.000940602 3 0.002148930 4 0.016276900 5 0.258758000 6 0.475551000 length variable value 1 18 sRNAseq_Ovaries_MTD_PiwiKD_rep2_283083_sRBC_CTGAT 0.000534645 2 19 sRNAseq_Ovaries_MTD_PiwiKD_rep2_283083_sRBC_CTGAT 0.001031360 3 20 sRNAseq_Ovaries_MTD_PiwiKD_rep2_283083_sRBC_CTGAT 0.002186290 4 21 sRNAseq_Ovaries_MTD_PiwiKD_rep2_283083_sRBC_CTGAT 0.013975400 5 22 sRNAseq_Ovaries_MTD_PiwiKD_rep2_283083_sRBC_CTGAT 0.238494000 6 23 sRNAseq_Ovaries_MTD_PiwiKD_rep2_283083_sRBC_CTGAT 0.461449000 /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2026-03-11-sRNAseq_GEO_format/TMP/ /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2026-03-11-sRNAseq_GEO_format/TMP/ /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2026-03-11-sRNAseq_GEO_format/TMP/ /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2026-03-11-sRNAseq_GEO_format/TMP/ [1] "hi" [1] "argmat" "args" "i" "INPUT" [5] "OPENdir" "STRINGENCYext" "TYPE" [1] "1360" [1] "1731" [1] "17.6" [1] "297" [1] "3S18" [1] "412" [1] "AATAT_87_randomDistribution" [1] "accord" [1] "accord2_new" [1] "ATAAGn_CTTATn_randomDistribution" [1] "baggins" [1] "Bari1" [1] "blood" [1] "Bari2" [1] "BS" [1] "BS3" [1] "BS4" [1] "Burdock" [1] "CACAAn_DMDNASMEM_randomDistribution" [1] "Circe" [1] "copia" [1] "Copia1" [1] "Cr1a" [1] "diver2" [1] "diver" [1] "Dm88" [1] "dm359_randomDistribution" [1] "DMSAT6_randomDistribution" [1] "Doc" [1] "Doc3-element" [1] "Doc4-element" [1] "Dsim_ninja" [1] "F-element" [1] "flea" [1] "frogger" [1] "Fw2" [1] "Fw3" [1] "G3" [1] "G2" [1] "G4" [1] "G5" [1] "G5A" [1] "G6" [1] "G7" [1] "GAGAAn_TTCTCn_randomDistribution" [1] "GATE" [1] "G-element" [1] "gypsy" [1] "gtwin" [1] "gypsy11" [1] "gypsy10_new" [1] "gypsy2_new" [1] "gypsy12" [1] "gypsy4" [1] "gypsy3_new" [1] "gypsy6_new" [1] "gypsy5" [1] "gypsy8" [1] "gypsy7_new" [1] "Helena" [1] "gypsy9_new" [1] "HeT-A" [1] "Helitron" [1] "HMS-Beagle2" [1] "HMS-Beagle" [1] "hopper" [1] "hobo" [1] "Idefix" [1] "hopper2" [1] "INE-1" [1] "I-element_new" [1] "invader2" [1] "invader1" [1] "invader4" [1] "invader3" [1] "invader6" [1] "invader5" [1] "jockey" [1] "Ivk" [1] "Juan" [1] "jockey2" [1] "mariner2" [1] "looper1" [1] "McClintock" [1] "Max-element" [1] "mdg3" [1] "mdg1" [1] "NOF" [1] "micropia" [1] "opus" [1] "NTS_DM_randomDistribution" [1] "P-element" [1] "Osvaldo" [1] "pogo" [1] "Pifo_Dya_repbase" [1] "R1-2" [1] "Quasimodo" [1] "R2-element" [1] "R1A1-element" [1] "Repbase_Chimpo" [1] "Repbase_Bica" [1] "Repbase_DNAREP1" [1] "Repbase_Rt1a" [1] "Repbase_Chouto" [1] "Repbase_Transib1" [1] "Repbase_FB4" [1] "rooA" [1] "Repbase_Rt1b" [1] "RSP_randomDistribution" [1] "roo" [1] "S2" [1] "rover" [1] "SAR_DM_randomDistribution" [1] "Satellite_353bp_1pt688_randomDistribution" [1] "Rt1c" [1] "Satellite_359bp_1pt688_randomDistribution" [1] "SAR2_DM_randomDistribution" [1] "Satellite_RRsp_randomDistribution" [1] "Satellite_260bp_1pt688_randomDistribution" [1] "small_kipf_region_randomDistribution" [1] "Satellite_356bp_1pt688_randomDistribution" [1] "Satellite_LRsp_randomDistribution" [1] "some_heterochromatin_region_randomDistribution" [1] "S-element" [1] "some_gene_Ebx_randomDistribution" [1] "Stalker" [1] "springer" [1] "Tabor" [1] "Stalker2" [1] "TART-A" [1] "TAHRE" [1] "TAS_2R_randomDistribution" [1] "TAS_2L_randomDistribution" [1] "TAS_X_randomDistribution" [1] "TAS_3L_randomDistribution" [1] "Tc1" [1] "Tc1-2" [1] "Tc3" [1] "Tirant" [1] "tirantS_Dsi_Lerat" [1] "transib2" [1] "transib3" [1] "transib4" [1] "Transib5" [1] "Transpac" [1] "XDMR_randomDistribution" [1] "X-element" [1] "ZAM" /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2026-03-11-sRNAseq_GEO_format/TMP/ /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2026-03-11-sRNAseq_GEO_format/TMP/ /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2026-03-11-sRNAseq_GEO_format/TMP/ /faststorage/project/PAN_illumina/tmp//thomasgrnbk/dm6/sRNAseq/2026-03-11-sRNAseq_GEO_format/TMP/ [1] "hi" [1] "argmat" "args" "i" "INPUT" [5] "OPENdir" "STRINGENCYext" "TYPE" [1] "1360" [1] "1731" [1] "17.6" [1] "297" [1] "3S18" [1] "412" [1] "AATAT_87_randomDistribution" [1] "accord" [1] "accord2_new" [1] "ATAAGn_CTTATn_randomDistribution" [1] "baggins" [1] "Bari1" [1] "blood" [1] "Bari2" [1] "BS" [1] "BS3" [1] "BS4" [1] "Burdock" [1] "CACAAn_DMDNASMEM_randomDistribution" [1] "Circe" [1] "copia" [1] "Copia1" [1] "Cr1a" [1] "diver" [1] "diver2" [1] "dm359_randomDistribution" [1] "Dm88" [1] "DMSAT6_randomDistribution" [1] "Doc" [1] "Doc3-element" [1] "Doc4-element" [1] "Dsim_ninja" [1] "F-element" [1] "flea" [1] "frogger" [1] "Fw2" [1] "Fw3" [1] "G2" [1] "G3" [1] "G4" [1] "G5" [1] "G5A" [1] "G6" [1] "G7" [1] "GAGAAn_TTCTCn_randomDistribution" [1] "GATE" [1] "G-element" [1] "gtwin" [1] "gypsy" [1] "gypsy10_new" [1] "gypsy11" [1] "gypsy2_new" [1] "gypsy12" [1] "gypsy4" [1] "gypsy3_new" [1] "gypsy6_new" [1] "gypsy5" [1] "gypsy8" [1] "gypsy7_new" [1] "Helena" [1] "gypsy9_new" [1] "HeT-A" [1] "Helitron" [1] "HMS-Beagle2" [1] "HMS-Beagle" [1] "hopper" [1] "hobo" [1] "Idefix" [1] "hopper2" [1] "I-element_new" [1] "INE-1" [1] "invader2" [1] "invader1" [1] "invader4" [1] "invader3" [1] "invader6" [1] "invader5" [1] "jockey" [1] "Ivk" [1] "Juan" [1] "jockey2" [1] "mariner2" [1] "looper1" [1] "McClintock" [1] "Max-element" [1] "mdg3" [1] "mdg1" [1] "NOF" [1] "micropia" [1] "opus" [1] "NTS_DM_randomDistribution" [1] "P-element" [1] "Osvaldo" [1] "pogo" [1] "Pifo_Dya_repbase" [1] "R1-2" [1] "Quasimodo" [1] "R2-element" [1] "R1A1-element" [1] "Repbase_Chimpo" [1] "Repbase_Bica" [1] "Repbase_DNAREP1" [1] "Repbase_Rt1a" [1] "Repbase_Chouto" [1] "Repbase_Transib1" [1] "Repbase_FB4" [1] "rooA" [1] "Repbase_Rt1b" [1] "RSP_randomDistribution" [1] "roo" [1] "S2" [1] "SAR_DM_randomDistribution" [1] "rover" [1] "Satellite_353bp_1pt688_randomDistribution" [1] "Rt1c" [1] "Satellite_359bp_1pt688_randomDistribution" [1] "Satellite_RRsp_randomDistribution" [1] "SAR2_DM_randomDistribution" [1] "small_kipf_region_randomDistribution" [1] "Satellite_260bp_1pt688_randomDistribution" [1] "Satellite_356bp_1pt688_randomDistribution" [1] "some_heterochromatin_region_randomDistribution" [1] "Satellite_LRsp_randomDistribution" [1] "S-element" [1] "Stalker" [1] "some_gene_Ebx_randomDistribution" [1] "Tabor" [1] "springer" [1] "TART-A" [1] "Stalker2" [1] "TAHRE" [1] "TAS_2R_randomDistribution" [1] "TAS_X_randomDistribution" [1] "TAS_2L_randomDistribution" [1] "TAS_3L_randomDistribution" [1] "Tc1-2" [1] "Tc1" [1] "Tirant" [1] "Tc3" [1] "tirantS_Dsi_Lerat" [1] "transib2" [1] "transib4" [1] "transib3" [1] "Transpac" [1] "Transib5" [1] "X-element" [1] "XDMR_randomDistribution" [1] "ZAM"