TE sRNAseq_Ovaries_MTD_PiwiKD_rep2_283083_sRBC_CTGAT sRNAseq_HsBam_ControlKD_0hAHS_rep3_283082_sRBC_GTCAG sRNAseq_HsBam_PiwiKD_0hAHS_rep2_283081_sRBC_GGTAT sRNAseq_HsBam_ControlKD_0hAHS_rep1_283080_sRBC_GTCAG sRNAseq_HsBam_ControlKD_0hAHS_rep2_283081_sRBC_CAGTG sRNAseq_HsBam_PiwiKD_0hAHS_rep3_283082_sRBC_CGTTC sRNAseq_HsBam_PiwiKD_0hAHS_rep1_283080_sRBC_CGTTC sRNAseq_Ovaries_MTD_ControlKD_rep1_283083_sRBC_ATGGA 1360 14047.5 46358.6 10177.9 32966.3 32089.3 9309.78 6665.82 15132.7 1731 3531.13 85627.7 17694.9 56853.3 57002.8 15897.3 11781.5 4522.93 17.6 2989.07 28011.1 6457.34 18534.8 17774.9 5590.65 3931.81 4198.15 297 2941.92 11172.7 2425.79 7390.41 6971.22 2093.67 1403.32 1894.46 3S18 20267.5 72359.5 23708.9 49513 49382.1 22241.4 15072.1 19248.7 412 3698.19 14945.4 2016.5 9678.79 9800.04 1764.57 1317.56 4390.76 AATAT_87_randomDistribution 0 0 0 0 0 0 0 0 accord 1151.75 25738.2 7981.29 16858.1 16439.2 7096.37 4966.4 1529.43 accord2_new 251.493 7343.15 1198.72 4658.12 4717.77 1026.87 760.912 295.968 ATAAGn_CTTATn_randomDistribution 0 0 0 0 0 0 0 0 baggins 2917.74 28153.2 6235.69 19250.5 18594.4 6086.05 4451.74 3380.56 Bari1 13430.3 104493 11515.7 73869.1 74301.6 10702.9 7628.93 14951.1 Bari2 22.5638 497.645 43.1691 326.015 456.735 70.4353 0 24.0386 blood 4890.13 14619.2 3505.85 9373.14 9511.63 3087.32 2190.24 4681.39 BS 9004.17 38558.4 8734.41 25589.9 25134.1 7712.74 5258.74 10499.9 BS3 1728.12 15847.9 2420.82 10395.6 10199.9 2173.85 1663.05 2035.42 BS4 15.3319 139.991 0 50.9581 41.1402 0 0 17.6431 Burdock 5893.79 14824.9 3097.16 9478.25 10044.6 2778.73 1825.83 5702.44 CACAAn_DMDNASMEM_randomDistribution 5383.15 200420 35423.9 163435 129838 35423.9 18850.1 8529.39 Circe 16092.6 82136.6 17732.7 57193.2 56758.3 15614.2 11404 19599 copia 9148.27 109349 17912.9 74815.7 74519.3 17640.9 12783.9 8820.92 Copia1 7165.27 56779 25192.1 37477.4 37822.4 23746.3 15692.8 7161.77 Cr1a 17380.9 72230.1 20380.6 53056.8 51321.5 17596.4 12993.7 18556.8 diver 9899.75 51532.2 28122.4 33918.1 34163.6 24351.6 17358.9 10958.4 diver2 9181.06 85926.9 25540.1 61922.8 62376 21838.2 16682.8 9942.66 dm359_randomDistribution 9548.35 136715 26858.4 93681.2 93082.5 24663.6 17551.1 13641.6 Dm88 4852.25 69045.4 15805.6 47082.3 46338.9 14941.6 10904.6 4145.05 DMSAT6_randomDistribution 61.4515 1549.87 294.096 973.41 1027.25 147.048 0 43.2744 Doc 19468.3 60856.7 21351.5 40858.6 39315.4 18970.5 13633.7 18373.5 Doc3-element 3108.11 19334.1 5768.67 12184.7 12543.4 4916.55 3576.09 3569.64 Doc4-element 123.849 4270.31 475.414 3040.52 2966.55 454.94 339.846 129.962 Dsim_ninja 7156.7 71298.2 26749.8 49598.1 47729.4 24952.9 17178.5 9361.73 F-element 19206.9 75155.8 25853 50474.4 48992.5 23402.3 16597.1 22060.4 flea 2995.34 49688.2 25411.8 32810.6 33573.3 22645.3 16104 2669.71 frogger 94.9599 3027.75 200.282 1960.46 2023.04 202.603 171.819 84.0158 Fw2 70.4167 1986.25 312.851 1415.48 1309.31 252.965 218.826 71.6646 Fw3 135.819 3146.67 161.477 2486.3 2226.92 105.286 104.525 180.108 G2 9887.82 86156.9 27174.2 55737.5 54751.8 22999.4 16495.6 13735.1 G3 58.449 1982.65 168.772 1466.41 1521.6 160.227 158.674 59.8254 G4 2472.94 10636.4 2124.34 7337.66 7002.18 1958.1 1359.74 3053.65 G5 567.978 38267.9 8335.74 27162 25902.4 7268.88 5197.46 607.589 G5A 599.223 9212.37 1020.78 6043.47 6041.29 1029.04 755.278 719.013 G6 10070.5 75403.7 18442.3 50751.3 49487.7 16527.7 11623.7 12169.1 G7 158.562 4662.91 460.267 2951.52 2970.37 331.816 317.341 172.702 GAGAAn_TTCTCn_randomDistribution 0 0 0 0 0 0 0 0 GATE 9114.51 66293.9 16738.6 45683 44906.2 14659.8 10517.1 10628.3 G-element 6718.71 83717.6 30826.3 56367.4 54023.5 25496.9 18139.4 9104.14 gtwin 662.818 23769 3761.02 15601.1 15972 3244.9 2319.51 819.116 gypsy 2074.49 25562.1 5512.49 16765.2 16319.6 4344.84 3474.05 2642.92 gypsy10_new 304.916 19308.5 5460.53 12595.2 12340.6 4850.25 3290.74 325.398 gypsy11 42.8348 514.676 18.8556 261.063 297.122 22.7687 19.344 43.2157 gypsy12 21925.7 54997 9818.6 37004.3 37545.2 9145.09 6553.24 28385.8 gypsy2_new 981.205 27014.1 4365.52 17975.8 18237.9 3902.94 2807.06 1146.29 gypsy3_new 1551.15 18447.1 6424.53 12324.1 12337.5 6072.68 4169.17 1788.08 gypsy4 2409.16 30295.8 5994.01 20214 19684.3 5496.55 3883.19 2678.69 gypsy5 25.4664 1253.49 31.1926 717.712 773.734 26.7594 19.5348 23.91 gypsy6_new 2240.57 37966.9 9050.04 25167.4 24999.5 7863.34 5759.48 2746.86 gypsy7_new 144.762 7801.01 1099.05 5056.58 4936.97 1055.4 751.19 155.544 gypsy8 335.875 3813.18 642.819 2556.87 2499.97 639.337 399.741 333.161 gypsy9_new 28.1965 2724.34 270.442 1822.01 1795.65 191.47 150.682 28.429 Helena 1008.69 18484 2760.25 12464.4 12033.9 2131.46 1544.69 947.299 Helitron 134.605 1395.45 172.563 603.169 869.993 92.3072 0 123.45 HeT-A 12493.9 83569 10202.1 55415.1 53788 7959.33 6266.01 16771.1 HMS-Beagle 11991.3 37889.5 24513.5 24505 24625.4 21982.7 15467.6 11628.3 HMS-Beagle2 4798.01 22709 2243.06 14690.4 14662 1970.94 1379.8 6444.68 hobo 997.737 24465.9 7077.37 16914.4 15695.8 6740.58 4596.08 1229.58 hopper 2700.86 52525.6 11604.5 38316.5 35841.3 10119.4 7643.62 2659.57 hopper2 2124.64 96528.3 9751.63 68118.5 69533.1 7468.59 6177.48 1692.89 Idefix 1014.09 12393.1 3025.41 8188.21 8209.16 2648.43 1817.48 909.066 I-element_new 4657.35 21500.4 9454.95 14231.7 13387 7919.91 5539.05 4680.94 INE-1 2579.09 17375.2 5364.85 9797.92 11754.7 6397.53 4125.49 2965.47 invader1 16682.4 108731 20886.3 74489.9 74442.7 18961.7 13601.3 22534.7 invader2 3293.72 70493 18305.7 46967.1 49469.8 17179.3 11710.2 3320.41 invader3 740.113 55210.5 17851.9 35558.1 35793.2 15781 11601.3 734.462 invader4 3361.66 55759 9093.33 38530.9 38593.6 8166.81 6069.08 3515.6 invader5 18.6738 201.375 14.5228 133.447 145.2 12.6346 6.24705 18.3886 invader6 11238 35692.1 6727.02 23485.7 23971 6216 4304.14 10761.4 Ivk 2931.94 33545.1 8100.93 22977 21580.3 6835.58 4732.66 3199.23 jockey 13570.3 41312.7 8980.28 27576 27312.4 7877.91 5270.6 13230.4 jockey2 130.938 3015.76 1188.78 2141.28 2003.95 1084.66 680.395 133.374 Juan 9485.73 25963.5 3105.58 17759.9 16569.5 2844.02 2005.63 9251.6 looper1 3968.53 14322.9 1712.98 9524.05 9924.18 1498.14 936.964 5069.84 mariner2 153.511 1020.31 67.4625 624.653 631.575 32.4514 79.3016 181.038 Max-element 17591.2 66237.9 12954.4 45607.2 44312.2 10929.2 7968.37 20522.3 McClintock 1591.05 20292.1 3484.43 13591.9 13340.3 2914.77 2146.91 1844.96 mdg1 1298.87 16495.8 2499.47 10895.5 10941.1 2206.5 1601.17 1208.7 mdg3 5957.47 45991.5 3180.92 30384.3 30336.1 2732.51 1960.32 5531.16 micropia 3421.12 71800.9 22603 48121.8 50021.6 19610.7 13982.8 4416.92 NOF 110.382 1634.27 85.8606 1147.78 1185.09 97.3352 55.3433 108.274 NTS_DM_randomDistribution 57116.6 106069 11377.6 69578.5 64276.4 17108.1 12763.1 53847.2 opus 8947.36 43548.8 9998.39 29180.5 29137 8667.18 6276.17 7647.24 Osvaldo 396.755 9800.18 1430.09 5930.76 6299.91 1368.44 874.031 505.829 P-element 21.9081 22.3487 0 17.1118 27.3515 0 0 21.7765 Pifo_Dya_repbase 29.7304 1753.76 84.9428 1122.47 1189.58 62.0433 41.775 36.5404 pogo 8221.34 71533.6 9494.04 48646.6 46763.8 8640.66 6198.35 8473.99 Quasimodo 2217.34 23557.8 4447.64 15853.1 15556.4 3994.86 2820.48 2384.59 R1-2 80.0732 1088.57 192.839 791.885 790.882 128.184 72.3286 107.207 R1A1-element 25599.2 153046 40194.4 105844 104393 36182.7 26175.9 39337.8 R2-element 193.472 27844.9 4759.91 18915.3 17759.2 4040.58 2807.95 282.686 Repbase_Bica 972.4 22998.7 7269.77 15271.6 15207.5 6961.04 4588.41 1058.6 Repbase_Chimpo 9923.71 78480.7 30840.8 52991.3 52885.3 27869.6 18520.8 12155.2 Repbase_Chouto 1015.3 20761.9 3851.07 14130.3 14082.8 3185.97 2303.25 1085.55 Repbase_DNAREP1 15554.2 32803.9 9200.46 25122.1 22620.1 8055.92 4788.76 12033.2 Repbase_FB4 309.868 819.333 407.399 515.378 590.994 546.345 333.501 211.426 Repbase_Rt1a 20927.9 63325.8 16860.5 42766.3 41712.4 15292.8 10208.6 23811.5 Repbase_Rt1b 22330 86702.3 28002.8 58552.2 58027.3 25622.3 18175 25539.4 Repbase_Transib1 655.756 6905.76 373.01 4927 4645.77 416.295 219.651 732.463 roo 13798.9 38764.9 11708.1 26459.1 26944 10751.6 7856.21 14830 rooA 2917.76 12690 2485.78 8281.99 8434.37 2220.89 1490.61 2770.16 rover 2139.77 23474.1 5787.72 15547.9 14533.9 5106 3507.71 2715.9 RSP_randomDistribution 1178.18 145143 55395.4 99628.5 142655 8109.92 44004.6 3617.09 Rt1c 497.93 3572.5 248.935 2406.69 2336.44 250.52 150.658 585.337 S2 180.296 1052.55 100.44 895.171 722.024 64.5859 58.9661 185.965 SAR2_DM_randomDistribution 355.846 33295.9 7228.04 23975.7 24681.7 5363.82 4341.55 347.014 SAR_DM_randomDistribution 54.048 234.825 41.6068 231.13 160.716 30.379 29.7271 63.8801 Satellite_260bp_1pt688_randomDistribution 176104 564403 101183 437038 390152 98422.8 57325.8 167026 Satellite_353bp_1pt688_randomDistribution 5836.55 142947 21010.6 95949.5 104545 18396.8 14376.6 5190.1 Satellite_356bp_1pt688_randomDistribution 68371.8 251723 56128.4 210019 212347 49138.4 41255.8 64122.1 Satellite_LRsp_randomDistribution 185820 5.40393e+06 1.34217e+06 3.54171e+06 3.46525e+06 1.17196e+06 967473 146616 Satellite_RRsp_randomDistribution 446746 6.69164e+06 1.93282e+06 4.58965e+06 4.53592e+06 1.75582e+06 1.28719e+06 389961 S-element 2900.7 18580.9 3419.97 12792 12946.9 3027.84 2161.34 2726.91 small_kipf_region_randomDistribution 24.6566 37.4501 31.4692 25.6313 30.6089 23.9416 17.9876 21.9128 some_gene_Ebx_randomDistribution 0 0 0 0 0 0 0 0 some_heterochromatin_region_randomDistribution 2595.92 6792.39 1965.95 4904.05 4786.42 1675 1300.01 2840.38 springer 6401.75 41370.1 9329.23 28314.5 27559.9 8175.47 5728.48 7463.2 Stalker 6220.59 24470.5 5593.8 16608.8 15936.3 4979.89 3677.15 6916.66 Stalker2 609.027 4081.96 710.259 2311.95 2489.58 599.78 430.073 788.156 Tabor 306.105 6314.97 543.921 4071.78 3927.28 501.713 333.97 172.536 TAHRE 2922.01 52121.4 2899.29 34320.7 32553.1 2233.03 1824.94 3908.3 TART-A 5717.09 39552.2 3535.43 25464.4 24367.1 3666.39 2131.64 9043.67 TAS_2L_randomDistribution 147472 78650.4 3109.25 59654.2 57386 2725.26 2094.47 203329 TAS_2R_randomDistribution 76278.8 171404 13481.2 121482 125864 9257.09 6193.31 99638.4 TAS_3L_randomDistribution 117002 84547.4 2300.77 61107.8 61559.9 2187.83 1645.09 29239.5 TAS_X_randomDistribution 2761.38 20264.8 1269.94 13632.4 12812 1112.35 766.09 3608.97 Tc1 148.146 4251.91 128.943 2374.57 3056.4 146.655 115.645 145.614 Tc1-2 2647.61 15416 3048.72 11344.3 10078.5 2562.62 1764.34 3522.01 Tc3 16.526 67.5749 14.0475 79.242 89.657 0 13.5666 8.93717 Tirant 124.608 4290.16 2405.05 2778.69 2757.81 2256.27 1595.41 130.281 tirantS_Dsi_Lerat 2.86097 23.6985 1.75374 18.9984 13.6232 2.58679 0.85286 3.83047 transib2 2674.71 20230.2 3502.81 13148.7 13699.7 2990.54 2171.83 2684.04 transib3 55.5465 2777.76 160.26 1608.06 1652.32 117.096 95.9309 34.4951 transib4 33.0884 176.866 26.8159 96.3755 93.7083 17.3416 17.0661 35.735 Transib5 277.236 9054.11 1355.58 6340.15 6333.58 1229.33 930.887 250.22 Transpac 2260.27 19009.9 4462.35 12499.2 12469.8 4331.49 2894.38 2371.83 XDMR_randomDistribution 4444.61 2576.79 317.455 1984.41 1337.66 315.41 311.404 3476.45 X-element 15398.1 70302.8 17047.5 47946.4 47153.4 14919.3 10468.5 18633.8 ZAM 54.0942 4474.99 164.393 2838.32 2929.95 150.311 117.669 55.7675