s21n34
USER_NAME=pra
TYPE=RNAseq
SLAM=N
BASE_FOLDER=/faststorage/project/PAN_illumina/results/
FOLDER=/faststorage/project/PAN_illumina/results//pra/dm6/RNAseq/2024-02-22-tPAF_bulk_RNAseq_trippools_preprint/
FOLDER_NAME=tPAF_bulk_RNAseq_trippools_preprint
RUNname=2024-02-22-tPAF_bulk_RNAseq_trippools_preprint
TMPdir=/faststorage/project/PAN_illumina/tmp//pra/dm6/RNAseq/2024-02-22-tPAF_bulk_RNAseq_trippools_preprint/
LIB_STORAGE_FOLDER=/faststorage/project/PAN_illumina/data/libSTORAGE/
SINGULARITYdir=/home/pra/AP_singu/
downDIR=/faststorage/project/PAN_illumina/tmp//NGS_downloads/
DEBUG=N
VERSION=r6.40
asmHUBpath=
ASMdir=
ASMname=
BAM=N
fwADAPTOR=AGATCGGAAGAGCACACGTCT
rvADAPTOR=AGATCGGAAGAGCGTCGTGTA
N_TRIMM=0
rawPAIRED=N
onlyPAIRED=N
FASTQout=N
FASTQoutRAW=N
SUBSAMPLE=
MIN_LENGTH=18
MAX_LENGTH=1000
RAW=
TRIMM=Y
FIRST=1
LAST=1000
INVERT=N
Ychrom=Y
RANDOMmulti=N
MM=2
FILTERING_INPUT=rRNA:tRNA:mito
WIG=Y
WIG_FASTA=
spikeINnorm=N
noNORM=
EXTEND=0
COMPUTING=C
GRIDsystem=SLURM
keepTMP=N
SCRIPT_DIR=/faststorage/project/PAN_illumina/tmp//pra/dm6/RNAseq/2024-02-22-tPAF_bulk_RNAseq_trippools_preprint/script-files/
BASE_UTILITY_LOCATION=/faststorage/project/PAN_illumina/utilities/AnnotationPipeline/
UTILITY_LOCATION=/faststorage/project/PAN_illumina/utilities/AnnotationPipeline/dmel/dm6/
RELEASE=
VERSION=r6.40
UTILITY_DIR=/faststorage/project/PAN_illumina/backup/scripts/AnnotationPipeline/utility-files/
nFILES=7
FILE_CONTAINING_LIBRARIES=/faststorage/project/PAN_illumina/tmp//pra/dm6/RNAseq/2024-02-22-tPAF_bulk_RNAseq_trippools_preprint/files.txt
FOLDER_NAME=tPAF_bulk_RNAseq_trippools_preprint
GENOME_VERSION=dm6
subCOLOR=0~128~0
FORCE=Y
SYSTEM=EXTERN
LOGs=/faststorage/project/PAN_illumina/results//pra/dm6/RNAseq/2024-02-22-tPAF_bulk_RNAseq_trippools_preprint/LOGs/
prepareREF=no
nSPLITS=1000000
SE=N
SE2nd=
maxCOUNT=1000000
autoViewLimits=
only5end=
DGE=N
GEO=
noSTRANDED=
FORCEimport=
exportBAM=N
exportBAMuncollapsed=N
RATIOtracks=N
GENOMEdir=/faststorage/project/PAN_illumina/results//pra/dm6/
newCOLLECTION=N
refGENO=none
GENO=none
Nexec=1
2
[1] "argmat"  "args"    "DGE"     "FOLDER"  "GENO"    "i"       "Nexec"  
[8] "refGENO" "TMP"    
[1] 1.0095495 0.9976029 0.9643146 1.0260459 0.9905149 1.0216036 0.9917123
0.283333